RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 PFN4Q8NHR9 129 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 NMNAT3Q96T66 252 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 NEU3Q9UQ49 428 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 CCL26Q9Y258 94 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 GFYI3L273 518 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 CLDN4O14493 209 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 ATG12O94817 140 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 F13BP05160 661 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 S100A2P29034 98 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 AGTR1P30556 359 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 PDX1P52945 283 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 OR1Q1Q15612 314 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 ITPRIPL2Q3MIP1 535 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 FAM69AQ5T7M9 428 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 ARHGAP11AQ6P4F7 1023 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 GPR32P1Q8NGA4 272 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 OR51D1Q8NGF3 324 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 LRIG1Q96JA1 1093 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 PARP12Q9H0J9 701 aaKnown RBP12.56□□□□□ -0.4
USP42-206ENST00000479544 HLA-AP01891 365 aaKnown RBP12.56□□□□□ -0.4
USP42-206ENST00000479544 ATP1B1P05026 303 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 ADRB3P13945 408 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 HTR1FP30939 366 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 SIRPAP78324 504 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 ZNF585AQ6P3V2 769 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 FAM83HQ6ZRV2 1179 aaPredicted RBP12.56□□□□□ -0.4
USP42-206ENST00000479544 CMIPQ8IY22 773 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 AMDHD1Q96NU7 426 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 SLC46A2Q9BY10 475 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 OR8D2Q9GZM6 311 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 RETREG1Q9H6L5 497 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 BIN3Q9NQY0 253 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 STARD5Q9NSY2 213 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 SLC35A3Q9Y2D2 325 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 A0A1W2PP55 124 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 TMEM189-UBE2V1I3L0A0 370 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 CASC3O15234 703 aaKnown RBP12.56□□□□□ -0.4
USP42-206ENST00000479544 CDC40O60508 579 aaKnown RBP eCLIP12.56□□□□□ -0.4
USP42-206ENST00000479544 PPP3CBP16298 524 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 HIST1H1TP22492 207 aaPredicted RBP12.56□□□□□ -0.4
USP42-206ENST00000479544 ZNF542PQ5EBM4 170 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 TMUB2Q71RG4 321 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 GDF7Q7Z4P5 450 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 OR8D4Q8NGM9 314 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 HCAR2Q8TDS4 363 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 NEK7Q8TDX7 302 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 RNF170Q96K19 258 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 ABRACLQ9P1F3 81 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 SLC6A5Q9Y345 797 aa12.56□□□□□ -0.4
USP42-206ENST00000479544 A0A0B4J2A0 478 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 C1orf196B1AJZ1 125 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 ZNF593O00488 134 aaPredicted RBP12.55□□□□□ -0.4
USP42-206ENST00000479544 AIFM1O95831 613 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 TPOP07202 933 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 CHRM4P08173 479 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 SNRNP70P08621 437 aaKnown RBP12.55□□□□□ -0.4
USP42-206ENST00000479544 UGT2B7P16662 529 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 FOXK2Q01167 660 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 TEKQ02763 1124 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 LTBQ06643 244 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 DYRK1AQ13627 763 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 SLC35D2Q76EJ3 337 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 OR51S1Q8NGJ8 323 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 GAL3ST3Q96A11 431 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 LINC00052Q96N35 136 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 TEAD3Q99594 435 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 C12orf57Q99622 126 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 PTDSS2Q9BVG9 487 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 SHPKQ9UHJ6 478 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 A0A1W2PPC1 479 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 ACHEP22303 614 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 RBM39Q14498 530 aaKnown RBP12.55□□□□□ -0.4
USP42-206ENST00000479544 EIF5AL1Q6IS14 154 aaKnown RBP12.55□□□□□ -0.4
USP42-206ENST00000479544 BAIAP2L2Q6UXY1 529 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 ESX1Q8N693 406 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 C12orf76Q8N812 135 aaPredicted RBP12.55□□□□□ -0.4
USP42-206ENST00000479544 STEAP2Q8NFT2 490 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 MFSD8Q8NHS3 518 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 MARVELD1Q9BSK0 173 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 RGCCQ9H4X1 137 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 Q9N2J8 555 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 GVINP1Q7Z2Y8 2422 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 PIKFYVEQ9Y2I7 2098 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 A8MVJ9 347 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 NDUFB2O95178 105 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 UBL4AP11441 157 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 PRLHRP49683 370 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 RAB28P51157 221 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 CDONQ4KMG0 1287 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 TTLL10Q6ZVT0 673 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 TMEM106AQ96A25 262 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 KCTD12Q96CX2 325 aaKnown RBP12.55□□□□□ -0.4
USP42-206ENST00000479544 ASB6Q9NWX5 421 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 PTTG3PQ9NZH4 202 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 GLS2Q9UI32 602 aa12.55□□□□□ -0.4
USP42-206ENST00000479544 KIAA0355O15063 1070 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 SLCO2B1O94956 709 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 KNG1P01042 644 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 CCR9P51686 369 aa12.54□□□□□ -0.4
USP42-206ENST00000479544 SEC61A1P61619 476 aaKnown RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms