RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 TIGD4Q8IY51 512 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 MMP21Q8N119 569 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 FAM86B1Q8N7N1 296 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 C16orf52Q8NHV5 167 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 ADAMTS16Q8TE57 1224 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 RELTQ969Z4 430 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 SDF2Q99470 211 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 SLC29A1Q99808 456 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 DCSTAMPQ9H295 470 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 FBXO8Q9NRD0 319 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 MCTS1Q9ULC4 181 aaKnown RBP7.88□□□□□ -1.15
SYNE1-211ENST00000413186 MN1Q10571 1320 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-211ENST00000413186 PIKFYVEQ9Y2I7 2098 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 EP300Q09472 2414 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-211ENST00000413186 TTLL8A6PVC2 850 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 UPK1AO00322 258 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 SLC1A7O00341 560 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 SEC14L5O43304 696 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 GATCO43716 136 aaKnown RBP7.88□□□□□ -1.15
SYNE1-211ENST00000413186 BPNT1O95861 308 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 RLN1P04808 185 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 LCKP06239 509 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 ZNF35P13682 527 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 TNFRSF1BP20333 461 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 VAMP1P23763 118 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 PNLIPRP2P54317 469 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 RAE1P78406 368 aaKnown RBP7.88□□□□□ -1.15
SYNE1-211ENST00000413186 OR1Q1Q15612 314 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 LRRC56Q8IYG6 542 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-211ENST00000413186 UBQLNLQ8IYU4 475 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 UBE2J2Q8N2K1 259 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 DUSP19Q8WTR2 217 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 ANKRA2Q9H9E1 313 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 SEC61A2Q9H9S3 476 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 SLAMF7Q9NQ25 335 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 CTSFQ9UBX1 484 aa7.88□□□□□ -1.15
SYNE1-211ENST00000413186 VSTM5A8MXK1 200 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 C11orf98E9PRG8 122 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 H7C1Q1 480 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 FRS3O43559 492 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 ZNF207O43670 478 aaKnown RBP7.87□□□□□ -1.15
SYNE1-211ENST00000413186 CLN5O75503 358 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 IL33O95760 270 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 CH25HO95992 272 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 HLA-DPB1P04440 258 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 GKN3PP0CG01 181 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 OSMP13725 252 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 NID1P14543 1247 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 HOXB3P14651 431 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-211ENST00000413186 RBM34P42696 430 aaKnown RBP7.87□□□□□ -1.15
SYNE1-211ENST00000413186 CSRP3P50461 194 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 CLRN1P58418 232 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 RBPJQ06330 500 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 ISXQ2M1V0 245 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 ENTPD8Q5MY95 495 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 TCEANCQ8N8B7 351 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 OR1N1Q8NGS0 311 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 KCNE4Q8WWG9 221 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 TTC9Q92623 222 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 KCTD7Q96MP8 289 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 VN1R1Q9GZP7 353 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 ANKRD19PQ9H560 264 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 ZNF385DQ9H6B1 395 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 KLHL21Q9UJP4 597 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 RNF6Q9Y252 685 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 FRG2CA6NGY1 282 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 C21orf140B9A014 251 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 SORBS2O94875 1100 aaKnown RBP7.87□□□□□ -1.15
SYNE1-211ENST00000413186 PEBP1P30086 187 aaKnown RBP7.87□□□□□ -1.15
SYNE1-211ENST00000413186 CCL11P51671 97 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 PDX1P52945 283 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 TLE3Q04726 772 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 CBX3Q13185 183 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 SSPNQ14714 243 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 TRAM1Q15629 374 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 MAPK14Q16539 360 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 PYDC2Q56P42 97 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 DHRS4L2Q6PKH6 230 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 LINC00696Q6ZRV3 163 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 ZNF808Q8N4W9 903 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-211ENST00000413186 FAM131CQ96AQ9 280 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 CHRNA10Q9GZZ6 450 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 COMMD4Q9H0A8 199 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 CKLFQ9UBR5 152 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 AHCTF1Q8WYP5 2266 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 ZNF670-ZNF695F2Z2N8 137 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 I3L521 148 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 SULT2B1O00204 365 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 CCRL2O00421 344 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 SSX5O60225 188 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 DDAH2O95865 285 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 ZNF43P17038 809 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 CBLP22681 906 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 GBX2P52951 348 aaPredicted RBP7.87□□□□□ -1.15
SYNE1-211ENST00000413186 MC2RQ01718 297 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 FRRS1Q6ZNA5 592 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 C15orf40Q8WUR7 153 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 SLC35A4Q96G79 324 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 UBTD1Q9HAC8 227 aa7.87□□□□□ -1.15
SYNE1-211ENST00000413186 LHX9Q9NQ69 397 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms