RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 PKDREJQ9NTG1 2253 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 A0A1B0GWA3 101 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 ELOVL7A1L3X0 281 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 ZNF814B7Z6K7 855 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 SYT5O00445 386 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 ZNF208O43345 1280 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 SS18L1O75177 396 aaPredicted RBP11.93□□□□□ -0.5
VPS28-201ENST00000292510 CRHP06850 196 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 IMPDH2P12268 514 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 TNFRSF1BP20333 461 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 UQCRC1P31930 480 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 OR2B6P58173 313 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 NCALDP61601 193 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 OR1Q1Q15612 314 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 NRF1Q16656 503 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 LRRC23Q53EV4 343 aaPredicted RBP11.93□□□□□ -0.5
VPS28-201ENST00000292510 FAM91A1Q658Y4 838 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 MEX3BQ6ZN04 569 aaKnown RBP11.93□□□□□ -0.5
VPS28-201ENST00000292510 FAM214BQ7L5A3 538 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 MCEMP1Q8IX19 187 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 LSMEM1Q8N8F7 131 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 OR6T1Q8NGN1 323 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 GMPPAQ96IJ6 420 aaPredicted RBP11.93□□□□□ -0.5
VPS28-201ENST00000292510 ZNF559Q9BR84 538 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 ENKD1Q9H0I2 346 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 OPN3Q9H1Y3 402 aaPredicted RBP11.93□□□□□ -0.5
VPS28-201ENST00000292510 ALG2Q9H553 416 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 ABCD2Q9UBJ2 740 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 RPS6KB2Q9UBS0 482 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 TESQ9UGI8 421 aaKnown RBP11.93□□□□□ -0.5
VPS28-201ENST00000292510 HDGFL3Q9Y3E1 203 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 DCHS2Q6V1P9 2916 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 HCFC1P51610 2035 aa11.93□□□□□ -0.5
VPS28-201ENST00000292510 TMEM229AB2RXF0 380 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 RAMP1O60894 148 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 PRKD3O94806 890 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 PMS2P2O95744 297 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 CGAP01215 116 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 C8BP07358 591 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 COX6B1P14854 86 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 IGFBP2P18065 325 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 PTNP21246 168 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 KDELR2P33947 212 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 CLK1P49759 484 aaKnown RBP11.92□□□□□ -0.5
VPS28-201ENST00000292510 CSNK2A1P68400 391 aaPredicted RBP11.92□□□□□ -0.5
VPS28-201ENST00000292510 SLC25A3Q00325 362 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 TSPYL5Q86VY4 417 aaPredicted RBP11.92□□□□□ -0.5
VPS28-201ENST00000292510 TUSC5Q8IXB3 177 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 RNF148Q8N7C7 305 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 ACBD4Q8NC06 268 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 RNF217Q8TC41 542 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 ZNF775Q96BV0 537 aaPredicted RBP11.92□□□□□ -0.5
VPS28-201ENST00000292510 MCHR1Q99705 422 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 KCTD14Q9BQ13 255 aaPredicted RBP11.92□□□□□ -0.5
VPS28-201ENST00000292510 RBM24Q9BX46 236 aaKnown RBP11.92□□□□□ -0.5
VPS28-201ENST00000292510 TRIM2Q9C040 744 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 PIGMQ9H3S5 423 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 TMEM181Q9P2C4 612 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 KLHL13Q9P2N7 655 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 ING1Q9UK53 422 aaPredicted RBP11.92□□□□□ -0.5
VPS28-201ENST00000292510 PROCRQ9UNN8 238 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 AP3M1Q9Y2T2 418 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 EMC9Q9Y3B6 208 aa11.92□□□□□ -0.5
VPS28-201ENST00000292510 A0A0B4J2E0 115 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 A0A1B0GX12 115 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 ELOA3DA6NLF2 546 aaPredicted RBP11.91□□□□□ -0.5
VPS28-201ENST00000292510 CPSF4LA6NMK7 179 aaKnown RBP11.91□□□□□ -0.5
VPS28-201ENST00000292510 A8MVM7 634 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 A8MXE2 369 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 CXCR6O00574 342 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 NDUFAB1O14561 156 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 GSTA4O15217 222 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 CYTIPO60759 359 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 NCK1P16333 377 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 FPR1P21462 350 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 FKBP2P26885 142 aaKnown RBP11.91□□□□□ -0.5
VPS28-201ENST00000292510 AGTR1P30556 359 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 IDUAP35475 653 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 CPOXP36551 454 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 CTBP2P56545 445 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 EGR4Q05215 589 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 RASGEF1BQ0VAM2 473 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 CEACAM7Q14002 265 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 KRT72Q14CN4 511 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 OR7A5Q15622 319 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 ELOA3BQ3SY89 546 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 FBXL19-AS1Q494R0 122 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 CYBRD1Q53TN4 286 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 ALG10BQ5I7T1 473 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 C1orf140Q5VVS0 124 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 ZNF474Q6S9Z5 364 aaPredicted RBP11.91□□□□□ -0.5
VPS28-201ENST00000292510 NUFIP2Q7Z417 695 aaKnown RBP11.91□□□□□ -0.5
VPS28-201ENST00000292510 RANBP3LQ86VV4 465 aaPredicted RBP11.91□□□□□ -0.5
VPS28-201ENST00000292510 CARM1Q86X55 608 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 P3H2Q8IVL5 708 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 CCDC103Q8IW40 242 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 DMRTC2Q8IXT2 367 aaPredicted RBP11.91□□□□□ -0.5
VPS28-201ENST00000292510 FAM156AQ8NDB6 213 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 ELOA3Q8NG57 546 aa11.91□□□□□ -0.5
VPS28-201ENST00000292510 BCAS4Q8TDM0 211 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms