RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 HAO2Q9NYQ3 351 aa18.39■□□□□ 0.54
VPS53-201ENST00000291074 NPAP1Q9NZP6 1156 aa18.39■□□□□ 0.54
VPS53-201ENST00000291074 A0A1B0GVC2 190 aa18.39■□□□□ 0.53
VPS53-201ENST00000291074 LILRA5A6NI73 299 aa18.39■□□□□ 0.53
VPS53-201ENST00000291074 A6NIN4 97 aa18.39■□□□□ 0.53
VPS53-201ENST00000291074 C4orf47A7E2U8 309 aa18.39■□□□□ 0.53
VPS53-201ENST00000291074 CD27P26842 260 aa18.39■□□□□ 0.53
VPS53-201ENST00000291074 OR1D4P47884 311 aa18.39■□□□□ 0.53
VPS53-201ENST00000291074 CCR4P51679 360 aa18.39■□□□□ 0.53
VPS53-201ENST00000291074 HSD17B7P56937 341 aa18.39■□□□□ 0.53
VPS53-201ENST00000291074 LYPD4Q6UWN0 246 aa18.39■□□□□ 0.53
VPS53-201ENST00000291074 MED25Q71SY5 747 aa18.39■□□□□ 0.53
VPS53-201ENST00000291074 GPALPP1Q8IXQ4 340 aa18.39■□□□□ 0.53
VPS53-201ENST00000291074 RASD2Q96D21 266 aa18.39■□□□□ 0.53
VPS53-201ENST00000291074 NMNAT3Q96T66 252 aa18.39■□□□□ 0.53
VPS53-201ENST00000291074 NEK6Q9HC98 313 aa18.39■□□□□ 0.53
VPS53-201ENST00000291074 PNO1Q9NRX1 252 aaKnown RBP18.39■□□□□ 0.53
VPS53-201ENST00000291074 A0A1W2PPK0 400 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 EFCAB7A8K855 629 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 SRFP11831 508 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 F8A1P23610 371 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 NUDT1P36639 197 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 PRAMEF17Q5VTA0 474 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 TDHQ8IZJ6 230 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 RDH10Q8IZV5 341 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 ADAMTS18Q8TE60 1221 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 KLHDC3Q9BQ90 382 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 PDE7BQ9NP56 450 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 EXTL2Q9UBQ6 330 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 ZNF221Q9UK13 617 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 ICAM5Q9UMF0 924 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 RP1P56715 2156 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 PSMD4P55036 377 aaKnown RBP18.38■□□□□ 0.53
VPS53-201ENST00000291074 CBLN3Q6UW01 205 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 SLC7A5P1Q8MH63 180 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 C19orf18Q8NEA5 215 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 ENKURQ8TC29 256 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 GHSRQ92847 366 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 UCKL1Q9NWZ5 548 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 RASD1Q9Y272 281 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 UNC13CQ8NB66 2214 aa18.38■□□□□ 0.53
VPS53-201ENST00000291074 IGKV1D-42A0A075B6H8 117 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 A0A0G2JMP0 313 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 A0A0X1KG70 313 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 TLCD2A6NGC4 264 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 MBTPS2O43462 519 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 ZNF217O75362 1048 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 CFL1P23528 166 aaKnown RBP18.37■□□□□ 0.53
VPS53-201ENST00000291074 THBS2P35442 1172 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 ERVK-25P63136 954 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 KLHL26Q53HC5 615 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 HBMQ6B0K9 141 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 DMKNQ6E0U4 476 aaPredicted RBP18.37■□□□□ 0.53
VPS53-201ENST00000291074 TTLL10Q6ZVT0 673 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 CMIPQ8IY22 773 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 ZNF687Q8N1G0 1237 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 OR4M2Q8NGB6 313 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 TSLPQ969D9 159 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 ZNF524Q96C55 264 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 MSANTD3Q96H12 275 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 DMRTB1Q96MA1 342 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 ST6GALNAC2Q9UJ37 374 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 METTL12A8MUP2 240 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 KRT8P05787 483 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 ACTC1P68032 377 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 ACTA1P68133 377 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.37■□□□□ 0.53
VPS53-201ENST00000291074 MOSPD2Q8NHP6 518 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 SLC2A12Q8TD20 617 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 PTPMT1Q8WUK0 201 aaPredicted RBP18.37■□□□□ 0.53
VPS53-201ENST00000291074 ST6GAL2Q96JF0 529 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.37■□□□□ 0.53
VPS53-201ENST00000291074 LANCL2Q9NS86 450 aa18.37■□□□□ 0.53
VPS53-201ENST00000291074 BLACEA4D250 179 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 SELENOFO60613 162 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 PAHP00439 452 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 HLA-DQB1P01920 261 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 EIF4EP06730 217 aaKnown RBP18.36■□□□□ 0.53
VPS53-201ENST00000291074 ALAS2P22557 587 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 MYL9P24844 172 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 MAP2K3P46734 347 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 SLC25A35Q3KQZ1 300 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 ACSM3Q53FZ2 586 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 COL13A1Q5TAT6 717 aaPredicted RBP18.36■□□□□ 0.53
VPS53-201ENST00000291074 SFXN4Q6P4A7 337 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 METAP1DQ6UB28 335 aaPredicted RBP18.36■□□□□ 0.53
VPS53-201ENST00000291074 APOOLQ6UXV4 268 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 SYT9Q86SS6 491 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 CNN2Q99439 309 aaKnown RBP18.36■□□□□ 0.53
VPS53-201ENST00000291074 TMEM43Q9BTV4 400 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 OR8D2Q9GZM6 311 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 NXF5Q9H1B4 397 aaKnown RBP18.36■□□□□ 0.53
VPS53-201ENST00000291074 ENAMQ9NRM1 1142 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 A0A0G2JK05 382 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 OR6C68A6NDL8 312 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 GMFGO60234 142 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 TAS2R43P59537 309 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 TBRG1Q3YBR2 411 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 PRR22Q8IZ63 422 aa18.36■□□□□ 0.53
VPS53-201ENST00000291074 PHOSPHO1Q8TCT1 267 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms