RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SYT14P1Q58G82 188 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 C1QTNF12Q5T7M4 302 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 OR4F15Q8NGB8 312 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 PIGXQ8TBF5 258 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 ARL8AQ96BM9 186 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 LRRC58Q96CX6 371 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 VPS11Q9H270 941 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 ZNF442Q9H7R0 627 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 ZDHHC2Q9UIJ5 367 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 PYCARDQ9ULZ3 195 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 SNX24Q9Y343 169 aa12.53□□□□□ -0.4
CLN3-249ENST00000636685 A0A0G2JMP0 313 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 A0A0X1KG70 313 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 DNAJC9-AS1A6NH13 148 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 H3BNH8 94 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 ULK1O75385 1050 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 HPXP02790 462 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 ALOX5P09917 674 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 TFPIP10646 304 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 MDKP21741 143 aaPredicted RBP12.52□□□□□ -0.41
CLN3-249ENST00000636685 TYK2P29597 1187 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 GCH1P30793 250 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 GSTM5P46439 218 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 TUBA1BP68363 451 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 TUBA4AP68366 448 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 POU6F2P78424 691 aaPredicted RBP12.52□□□□□ -0.41
CLN3-249ENST00000636685 MYBPC1Q00872 1141 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 RBMS3Q6XE24 437 aaKnown RBP12.52□□□□□ -0.41
CLN3-249ENST00000636685 TUBA1AQ71U36 451 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 LSRQ86X29 649 aaPredicted RBP12.52□□□□□ -0.41
CLN3-249ENST00000636685 ZNF614Q8N883 585 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 NUP37Q8NFH4 326 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 OR4M2Q8NGB6 313 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 OR5W2Q8NH69 310 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 JADE3Q92613 823 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 DVL3Q92997 716 aaPredicted RBP12.52□□□□□ -0.41
CLN3-249ENST00000636685 MRRFQ96E11 262 aaKnown RBP12.52□□□□□ -0.41
CLN3-249ENST00000636685 ZHX1-C8orf76Q96EF9 292 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 C1orf147Q96MC9 270 aaPredicted RBP12.52□□□□□ -0.41
CLN3-249ENST00000636685 MS4A4EQ96PG1 132 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 BTBD2Q9BX70 525 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 PDP1Q9P0J1 537 aaPredicted RBP12.52□□□□□ -0.41
CLN3-249ENST00000636685 TMCO1Q9UM00 188 aa12.52□□□□□ -0.41
CLN3-249ENST00000636685 NUP214P35658 2090 aaPredicted RBP12.51□□□□□ -0.41
CLN3-249ENST00000636685 NR5A2O00482 541 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 PPIHO43447 177 aaKnown RBP12.51□□□□□ -0.41
CLN3-249ENST00000636685 PLPP2O43688 288 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 SKAP2O75563 359 aaPredicted RBP12.51□□□□□ -0.41
CLN3-249ENST00000636685 MPZL1O95297 269 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 FSHBP01225 129 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 TCN1P20061 433 aaPredicted RBP12.51□□□□□ -0.41
CLN3-249ENST00000636685 HSD17B3P37058 310 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 SESN3P58005 492 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 MERTKQ12866 999 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 TBRG1Q3YBR2 411 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 ZNF311Q5JNZ3 666 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 EXOSC6Q5RKV6 272 aaKnown RBP12.51□□□□□ -0.41
CLN3-249ENST00000636685 ANKRD26P1Q6NSI1 321 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 CDC73Q6P1J9 531 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 MYPOPQ86VE0 399 aaPredicted RBP12.51□□□□□ -0.41
CLN3-249ENST00000636685 CDS1Q92903 461 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 YIPF5Q969M3 257 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 CIDECQ96AQ7 238 aaPredicted RBP12.51□□□□□ -0.41
CLN3-249ENST00000636685 ARL5BQ96KC2 179 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 ANKRD27Q96NW4 1050 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 OBP2BQ9NPH6 170 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 SERINC1Q9NRX5 453 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 ZNF275Q9NSD4 429 aaPredicted RBP12.51□□□□□ -0.41
CLN3-249ENST00000636685 CRNNQ9UBG3 495 aaPredicted RBP12.51□□□□□ -0.41
CLN3-249ENST00000636685 POLR3HQ9Y535 204 aaPredicted RBP12.51□□□□□ -0.41
CLN3-249ENST00000636685 FLVCR1Q9Y5Y0 555 aa12.51□□□□□ -0.41
CLN3-249ENST00000636685 VSTM5A8MXK1 200 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 HSPA4LO95757 839 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 CELA3BP08861 270 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 RBP1P09455 135 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 ATP6V1C1P21283 382 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 ACHEP22303 614 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 HMOX2P30519 316 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 MAGEA8P43361 318 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 ASMTP46597 345 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 CLCQ05315 142 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 CBFBQ13951 182 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 RASA2Q15283 850 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 SLC9B1Q4ZJI4 515 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 SPDYAQ5MJ70 313 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 ACSM5Q6NUN0 579 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 LEG1Q6P5S2 330 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 RIBC1Q8N443 379 aaPredicted RBP12.5□□□□□ -0.41
CLN3-249ENST00000636685 METTL6Q8TCB7 284 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 RDH5Q92781 318 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 CHMP6Q96FZ7 201 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 THUMPD3Q9BV44 507 aaKnown RBP12.5□□□□□ -0.41
CLN3-249ENST00000636685 HOXD1Q9GZZ0 328 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 ZNF665Q9H7R5 613 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 PARPBPQ9NWS1 579 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 SIRT5Q9NXA8 310 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 OPN4Q9UHM6 478 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 SLC9A8Q9Y2E8 581 aa12.5□□□□□ -0.41
CLN3-249ENST00000636685 OR6C65A6NJZ3 312 aa12.49□□□□□ -0.41
CLN3-249ENST00000636685 J3QLI3 93 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms