RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 RWDD3Q9Y3V2 267 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 TRAV18A0A075B6X5 111 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 TACSTD2P09758 323 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 PTBP1P26599 531 aaKnown RBP eCLIP11.68□□□□□ -0.547e-7■■■■□ 23
LIG1-221ENST00000613670 PRKAR1BP31321 381 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 OPRD1P41143 372 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 NRG3P56975 720 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 SIRPAP78324 504 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 RPL13AP3Q6NVV1 102 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 KRT77Q7Z794 578 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 POGLUT1Q8NBL1 392 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 BRIX1Q8TDN6 353 aaKnown RBP11.68□□□□□ -0.54
LIG1-221ENST00000613670 HCAR2Q8TDS4 363 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 DIO2Q92813 273 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 SLC25A36Q96CQ1 311 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 RNF170Q96K19 258 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 B3GNT4Q9C0J1 378 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 TMEM185BQ9H7F4 350 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 MBNL1Q9NR56 388 aaKnown RBP11.68□□□□□ -0.54
LIG1-221ENST00000613670 C20orf141Q9NUB4 165 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 IL20Q9NYY1 176 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 F3P13726 295 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 PVRP15151 417 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 TYRP1P17643 537 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 ATF1P18846 271 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 ACTA2P62736 377 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 ACTG2P63267 376 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 TNK1Q13470 666 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 METRNLQ641Q3 311 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 FAAH2Q6GMR7 532 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 C12orf40Q86WS4 652 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 ZNF761Q86XN6 746 aaPredicted RBP11.68□□□□□ -0.54
LIG1-221ENST00000613670 ZNF619Q8N2I2 560 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 FBXL6Q8N531 539 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 ZNF471Q9BX82 626 aaPredicted RBP11.68□□□□□ -0.54
LIG1-221ENST00000613670 KLK11Q9UBX7 282 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 PLEKHA6Q9Y2H5 1048 aa11.68□□□□□ -0.54
LIG1-221ENST00000613670 NOP16Q9Y3C1 178 aaKnown RBP11.68□□□□□ -0.54
LIG1-221ENST00000613670 ATP6V1G2-DDX39BF2Z307 99 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 LGALS8O00214 317 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 NARSO43776 548 aaKnown RBP11.67□□□□□ -0.54
LIG1-221ENST00000613670 CSTAP01040 98 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 OR8G3PP0DMU2 310 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 MAKP20794 623 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 AGFG1P52594 562 aaKnown RBP11.67□□□□□ -0.54
LIG1-221ENST00000613670 OLFML2AQ68BL7 652 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 LEG1Q6P5S2 330 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 IDO2Q6ZQW0 420 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 CAMKVQ8NCB2 501 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 OR2L3Q8NG85 312 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 SGTBQ96EQ0 304 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 WDR34Q96EX3 536 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 FOXN4Q96NZ1 517 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 LMF1Q96S06 567 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 NMNAT3Q96T66 252 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 KXD1Q9BQD3 176 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 SEMA4CQ9C0C4 833 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 PPA2Q9H2U2 334 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 SAV1Q9H4B6 383 aaPredicted RBP11.67□□□□□ -0.54
LIG1-221ENST00000613670 LAMP5Q9UJQ1 280 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 TEX51A0A1B0GUA7 166 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 ZNF593O00488 134 aaPredicted RBP11.67□□□□□ -0.54
LIG1-221ENST00000613670 RECKO95980 971 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 WNT1P04628 370 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 VAMP1P23763 118 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 RAD52P43351 418 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 SKP1P63208 163 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 LHX8Q68G74 356 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 BTN2A1Q7KYR7 527 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 ABHD13Q7L211 337 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 PDZD9Q8IXQ8 264 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 OR2A1Q8NGT9 310 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 CASTOR1Q8WTX7 329 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 SF3B6Q9Y3B4 125 aaKnown RBP11.67□□□□□ -0.54
LIG1-221ENST00000613670 V9GY05 133 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 XKRYO14609 159 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 NDUFB2O95178 105 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 TPOP07202 933 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 PRKACAP17612 351 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 ADAM8P78325 824 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 DEFB110Q30KQ9 67 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 BEX5Q5H9J7 111 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 PRSS58Q8IYP2 241 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 JAGN1Q8N5M9 183 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 METTL27Q8N6F8 245 aaPredicted RBP11.67□□□□□ -0.54
LIG1-221ENST00000613670 LINC01555Q8NAE3 123 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 ZNF511Q8NB15 262 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 DNAAF1Q8NEP3 725 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 TSACCQ96A04 125 aaPredicted RBP11.67□□□□□ -0.54
LIG1-221ENST00000613670 GAL3ST4Q96RP7 486 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 KCMF1Q9P0J7 381 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 MLXQ9UH92 298 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 CAMK2AQ9UQM7 478 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 CARNS1A5YM72 827 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 FKTNO75072 461 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 APODP05090 189 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 NFYAP23511 347 aaPredicted RBP11.67□□□□□ -0.54
LIG1-221ENST00000613670 MAP3K8P41279 467 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 TMEM64Q6YI46 380 aa11.67□□□□□ -0.54
LIG1-221ENST00000613670 ZBTB44Q8NCP5 570 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms