RNA–Protein interactions for RNA: ENST00000578044.5

SMARCE1-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,184 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-213ENST00000578044 CALML5Q9NZT1 146 aa12.84□□□□□ -0.35
SMARCE1-213ENST00000578044 MALT1Q9UDY8 824 aa12.84□□□□□ -0.35
SMARCE1-213ENST00000578044 SONP18583 2426 aaKnown RBP12.84□□□□□ -0.35
SMARCE1-213ENST00000578044 ATRQ13535 2644 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 CENPVL1A0A0U1RR11 272 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 A0A1W2PNR3 127 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 PRAMEF27A3QJZ7 478 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 OR5H1A6NKK0 313 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 ZNF716A6NP11 495 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 KLF11O14901 512 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 ADAP00813 363 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 DBIP07108 87 aaKnown RBP12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 CD3EP07766 207 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 ALDOCP09972 364 aaKnown RBP12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 DANCRP0C864 163 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 UQCRBP14927 111 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 SLC1A3P43003 542 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 MRPL19P49406 292 aaKnown RBP12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 RPS4XP62701 263 aaKnown RBP12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 ZNF672Q499Z4 452 aaPredicted RBP12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 PDCD4Q53EL6 469 aaKnown RBP12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 HHATQ5VTY9 493 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 FBXW9Q5XUX1 488 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 ATG16L1Q676U5 607 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 OR7E24Q6IFN5 339 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 TNFAIP8L2Q6P589 184 aaPredicted RBP12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 ANKRD46Q86W74 232 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 ADGRG3Q86Y34 549 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 LILRB1Q8NHL6 650 aaPredicted RBP12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 MUCL1Q96DR8 90 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 TRMT61AQ96FX7 289 aaKnown RBP12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 Q96MF0 132 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 PANX1Q96RD7 426 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 ZBTB18Q99592 522 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 KCNK9Q9NPC2 374 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 SDR39U1Q9NRG7 319 aaPredicted RBP12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 TMEM181Q9P2C4 612 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 MGAT4BQ9UQ53 548 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 DSPPQ9NZW4 1301 aa12.83□□□□□ -0.36
SMARCE1-213ENST00000578044 DIAPH2O60879 1101 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 CPSF4O95639 269 aaKnown RBP12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 GGT1P19440 569 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 WDR4P57081 412 aaKnown RBP12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 PLAURQ03405 335 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 CHRNEQ04844 493 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 PRAMEF8Q5VWM4 474 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 PRAMEF7Q5VXH5 474 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 DTX2Q86UW9 622 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 RNF130Q86XS8 419 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 CLEC4FQ8N1N0 589 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 ZNF433Q8N7K0 673 aaPredicted RBP12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 C1orf162Q8NEQ5 155 aaPredicted RBP12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 RFWD2Q8NHY2 731 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 ZNF563Q8TA94 476 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 AKAP1Q92667 903 aaKnown RBP eCLIP12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 RAB8BQ92930 207 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 ZG16BQ96DA0 208 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 PERPQ96FX8 193 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 TEX37Q96LM6 180 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 OR52E6Q96RD3 313 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 TRIM2Q9C040 744 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 AMBRA1Q9C0C7 1298 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 ADAM19Q9H013 955 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 QRSL1Q9H0R6 528 aaKnown RBP12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 CTPS2Q9NRF8 586 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 FAIMQ9NVQ4 179 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 PNPOQ9NVS9 261 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 PARPBPQ9NWS1 579 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 ZIM2Q9NZV7 527 aa12.82□□□□□ -0.36
SMARCE1-213ENST00000578044 ALPK2Q86TB3 2170 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 TMEM120BA0PK00 339 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 H7C1Q1 480 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 PLAUP00749 431 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 POLR2HP52434 150 aaKnown RBP12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 CASP9P55211 416 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 UFM1P61960 85 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 SLC35A1P78382 337 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 IRX1P78414 480 aaPredicted RBP12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 PPA1Q15181 289 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 GPAT3Q53EU6 434 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 RNF220Q5VTB9 566 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 PAQR6Q6TCH4 344 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 PEX5LQ8IYB4 626 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 ZNF100Q8IYN0 542 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 C17orf78Q8N4C9 275 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 ATP6V1C2Q8NEY4 427 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 DDIT4LQ96D03 193 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 PPP1R36Q96LQ0 422 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 MUS81Q96NY9 551 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 SF3B5Q9BWJ5 86 aaKnown RBP12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 TMEM45AQ9NWC5 275 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 TAS2R16Q9NYV7 291 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 DCTN4Q9UJW0 460 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 NOSIPQ9Y314 301 aaKnown RBP12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 GMEB1Q9Y692 573 aa12.81□□□□□ -0.36
SMARCE1-213ENST00000578044 A0A096LPI6 279 aa12.8□□□□□ -0.36
SMARCE1-213ENST00000578044 CDHR4A6H8M9 788 aa12.8□□□□□ -0.36
SMARCE1-213ENST00000578044 CFAP73A6NFT4 308 aa12.8□□□□□ -0.36
SMARCE1-213ENST00000578044 PDLIM1O00151 329 aa12.8□□□□□ -0.36
SMARCE1-213ENST00000578044 RFXANKO14593 260 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms