RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 OR10H3O60404 316 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 TOM1L1O75674 476 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 UGT2B17O75795 530 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 SLITRK3O94933 977 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 IGKV4-1P06312 121 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 RBMY1CP0DJD4 496 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 ADRA1AP35348 466 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 TAS2R19P59542 299 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 CNTN2Q02246 1040 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 MOBPQ13875 183 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 GAMTQ14353 236 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 SLC5A12Q1EHB4 618 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 ZNF836Q6ZNA1 936 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 ACP7Q6ZNF0 438 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 CAMK2N1Q7Z7J9 78 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 CALHM3Q86XJ0 350 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 FAM71CQ8NEG0 241 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 GIPC3Q8TF64 312 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 KCNA7Q96RP8 456 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 HIST1H4GQ99525 98 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 CITED1Q99966 193 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 ZNF670Q9BS34 389 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 RAB17Q9H0T7 212 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 DHX33Q9H6R0 707 aaKnown RBP1.51□□□□□ -2.17
VPS35-207ENST00000568191 NGBQ9NPG2 151 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP1.51□□□□□ -2.17
VPS35-207ENST00000568191 B9D1Q9UPM9 204 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 CUX2O14529 1486 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 IGKV1D-8A0A087WSZ0 117 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 E7ESA3 106 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 B4GALT5O43286 388 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 NEBLO76041 1014 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 OR4F21O95013 312 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 HNF1AP20823 631 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 ANXA13P27216 316 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 HSPA2P54652 639 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 SELENOTP62341 195 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 ATXN7L3Q14CW9 347 aaPredicted RBP1.5□□□□□ -2.17
VPS35-207ENST00000568191 GPRC6AQ5T6X5 926 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 RAET1GQ6H3X3 334 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 ANKRD37Q7Z713 158 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 HMGN2P46Q86SG4 172 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 KIAA1328Q86T90 577 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 CBWD2Q8IUF1 395 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 ZNF695Q8IW36 515 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 OR56B4Q8NH76 319 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 UBALD1Q8TB05 177 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 TCTEX1D2Q8WW35 142 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 PGLYRP4Q96LB8 373 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 TSG101Q99816 390 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 ZNF2Q9BSG1 426 aaPredicted RBP1.5□□□□□ -2.17
VPS35-207ENST00000568191 GSDMCQ9BYG8 508 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 OR11A1Q9GZK7 315 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 MEAF6Q9HAF1 191 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 MRPL39Q9NYK5 338 aaKnown RBP1.5□□□□□ -2.17
VPS35-207ENST00000568191 RNF6Q9Y252 685 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 KNSTRNQ9Y448 316 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 CLCA3PQ9Y6N3 262 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 PHF3Q92576 2039 aaKnown RBP1.5□□□□□ -2.17
VPS35-207ENST00000568191 HMCN1Q96RW7 5635 aa1.5□□□□□ -2.17
VPS35-207ENST00000568191 PLEKHH1Q9ULM0 1364 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 TRAV40A0A0B4J280 105 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 KIR2DS1A0A191URI9 304 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 A0A1B0GUL7 405 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 KRT87PA6NCN2 255 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 C11orf94C9JXX5 98 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 CHADO15335 359 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 VPS26AO75436 327 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 ICAM2P13598 275 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 POU2F1P14859 743 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 ZNF14P17017 642 aaPredicted RBP1.49□□□□□ -2.17
VPS35-207ENST00000568191 NMUP48645 174 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 RPS14P62263 151 aaKnown RBP1.49□□□□□ -2.17
VPS35-207ENST00000568191 TGFBR3Q03167 851 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 RIPPLY1Q0D2K3 151 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 KIR2DS1Q14954 304 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 CCDC57Q2TAC2 916 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 NANOGP8Q6NSW7 305 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 FAHD2BQ6P2I3 314 aaPredicted RBP1.49□□□□□ -2.17
VPS35-207ENST00000568191 GDPD3Q7L5L3 318 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 APTXQ7Z2E3 356 aaKnown RBP1.49□□□□□ -2.17
VPS35-207ENST00000568191 DPY19L4Q7Z388 723 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 RALGPS2Q86X27 583 aaPredicted RBP1.49□□□□□ -2.17
VPS35-207ENST00000568191 GRAMD2AQ8IUY3 354 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 MFSD6LQ8IWD5 586 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 CYB561D1Q8N8Q1 229 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 NKAPP1Q8N9T2 125 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 CCDC54Q8NEL0 328 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 OR5AU1Q8NGC0 362 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 OR51S1Q8NGJ8 323 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 FRZBQ92765 325 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 SMARCD2Q92925 531 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 FAHD2AQ96GK7 314 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 FAM111AQ96PZ2 611 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 VPS35Q96QK1 796 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 GAL3ST1Q99999 423 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 SPXQ9BT56 116 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 SPATA16Q9BXB7 569 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 ROGDIQ9GZN7 287 aa1.49□□□□□ -2.17
VPS35-207ENST00000568191 HSD3B7Q9H2F3 369 aa1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms