RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 UQCC2Q9BRT2 126 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 SLC25A18Q9H1K4 315 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 C20orf85Q9H1P6 137 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 OR10A4Q9H209 315 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 IL21RQ9HBE5 538 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 ST6GALNAC2Q9UJ37 374 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 SATB2Q9UPW6 733 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 SPTBP11277 2137 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 RPS10-NUDT3A0A1W2PQS6 291 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 A8MUA0 341 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 LYPD3O95274 346 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 EML2O95834 649 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 CEACAM5P06731 702 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 ZNF3P17036 446 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 VEGFCP49767 419 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 MNX1P50219 401 aaPredicted RBP12.19□□□□□ -0.46
CLN3-210ENST00000563874 TAS2R43P59537 309 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 RUNX2Q13950 521 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 EXOSC7Q15024 291 aaKnown RBP12.19□□□□□ -0.46
CLN3-210ENST00000563874 PXDC1Q5TGL8 231 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 GPR139Q6DWJ6 353 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 FAAP20Q6NZ36 180 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 BTN2A1Q7KYR7 527 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 ZAR1Q86SH2 424 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 HDDC3Q8N4P3 179 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 COX18Q8N8Q8 333 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 OR52E2Q8NGJ4 325 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 PHPT1Q9NRX4 125 aaPredicted RBP12.19□□□□□ -0.46
CLN3-210ENST00000563874 NPFFR2Q9Y5X5 522 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 KNL1Q8NG31 2342 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 IMPA2O14732 288 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 NID1P14543 1247 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 SLC2A5P22732 501 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 TNFRSF17Q02223 184 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 PLAURQ03405 335 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 PUDPQ08623 228 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 KLF9Q13886 244 aaPredicted RBP12.19□□□□□ -0.46
CLN3-210ENST00000563874 AMZ1Q400G9 498 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 CHMP1BQ7LBR1 199 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 KANSL1Q7Z3B3 1105 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 CMTM4Q8IZR5 234 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 ZNF619Q8N2I2 560 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 ZNF433Q8N7K0 673 aaPredicted RBP12.19□□□□□ -0.46
CLN3-210ENST00000563874 HAVCR2Q8TDQ0 301 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 RAB7BQ96AH8 199 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 PELI1Q96FA3 418 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 DDOQ99489 341 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 ZNF559Q9BR84 538 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 ZNF350Q9GZX5 532 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 INPP5EQ9NRR6 644 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 LYARQ9NX58 379 aaKnown RBP12.19□□□□□ -0.46
CLN3-210ENST00000563874 GNG8Q9UK08 70 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 P2RX6O15547 441 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 STX11O75558 287 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 OR7A10O76100 309 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 CCL5P13501 91 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 PITPNAQ00169 270 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 TRAM1Q15629 374 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 FAM78AQ5JUQ0 283 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 ZNF425Q6IV72 752 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 NLRC3Q7RTR2 1065 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 MS4A15Q8N5U1 240 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 FAM98AQ8NCA5 519 aaKnown RBP12.18□□□□□ -0.46
CLN3-210ENST00000563874 LCN9Q8WX39 176 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 HGDQ93099 445 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 TRIM43Q96BQ3 446 aaPredicted RBP12.18□□□□□ -0.46
CLN3-210ENST00000563874 ERMAPQ96PL5 475 aaPredicted RBP12.18□□□□□ -0.46
CLN3-210ENST00000563874 RAB11FIP5Q9BXF6 653 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 GXYLT2A0PJZ3 443 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 ACOD1A6NK06 481 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 IDSB3KWA1 339 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 G3V3Q6 166 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 ADAM11O75078 769 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 SERPINI2O75830 405 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 IFNA7P01567 189 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 GRPRP30550 384 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 GXYLT1Q4G148 440 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 PSRC1Q6PGN9 363 aaPredicted RBP12.18□□□□□ -0.46
CLN3-210ENST00000563874 RTL4Q6ZR62 310 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 PRSS41Q7RTY9 318 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 OR11G2Q8NGC1 345 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 OR56B4Q8NH76 319 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 CNOT9Q92600 299 aaKnown RBP12.18□□□□□ -0.46
CLN3-210ENST00000563874 ZNF707Q96C28 371 aaPredicted RBP12.18□□□□□ -0.46
CLN3-210ENST00000563874 SEC22CQ9BRL7 303 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 ZNF436Q9C0F3 470 aaPredicted RBP12.18□□□□□ -0.46
CLN3-210ENST00000563874 KCMF1Q9P0J7 381 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 COPZ2Q9P299 210 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 KLK11Q9UBX7 282 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 UBQLN2Q9UHD9 624 aa12.18□□□□□ -0.46
CLN3-210ENST00000563874 A0A087WV48 116 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 TBC1D3EA0A087X179 549 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 TRBV2A0A0J9YWF9 115 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 DBIP07108 87 aaKnown RBP12.17□□□□□ -0.46
CLN3-210ENST00000563874 NGFRP08138 427 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 CPMP14384 443 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 M6PRP20645 277 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 NT5EP21589 574 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 TSPAN5P62079 268 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 GRK1Q15835 563 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 124.1 ms