RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 OSTF1Q92882 214 aa12.87□□□□□ -0.35
USP3-205ENST00000557884 WNT2BQ93097 391 aa12.87□□□□□ -0.35
USP3-205ENST00000557884 SLC35B4Q969S0 331 aa12.87□□□□□ -0.35
USP3-205ENST00000557884 SRXN1Q9BYN0 137 aa12.87□□□□□ -0.35
USP3-205ENST00000557884 ADAM19Q9H013 955 aa12.87□□□□□ -0.35
USP3-205ENST00000557884 COQ10BQ9H8M1 238 aa12.87□□□□□ -0.35
USP3-205ENST00000557884 COQ3Q9NZJ6 369 aa12.87□□□□□ -0.35
USP3-205ENST00000557884 RPS6KB2Q9UBS0 482 aa12.87□□□□□ -0.35
USP3-205ENST00000557884 EGFL7Q9UHF1 273 aa12.87□□□□□ -0.35
USP3-205ENST00000557884 SPIN1Q9Y657 262 aaPredicted RBP12.87□□□□□ -0.35
USP3-205ENST00000557884 USP9YO00507 2555 aaPredicted RBP12.87□□□□□ -0.35
USP3-205ENST00000557884 GTF3C1Q12789 2109 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 PCNX3Q9H6A9 2034 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 A0A1B0GWA3 101 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 MBD3L4A6NDZ8 208 aaPredicted RBP12.86□□□□□ -0.35
USP3-205ENST00000557884 MBD3L3A6NE82 208 aaPredicted RBP12.86□□□□□ -0.35
USP3-205ENST00000557884 MBD3L5A6NJ08 208 aaPredicted RBP12.86□□□□□ -0.35
USP3-205ENST00000557884 TPST2O60704 377 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 SYNGR4O95473 234 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 IFNA14P01570 189 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 IL2RAP01589 272 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 CEACAM8P31997 349 aaPredicted RBP12.86□□□□□ -0.35
USP3-205ENST00000557884 MSX2P35548 267 aaPredicted RBP12.86□□□□□ -0.35
USP3-205ENST00000557884 TIMP3P35625 211 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 CPOXP36551 454 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 AGFG1P52594 562 aaKnown RBP12.86□□□□□ -0.35
USP3-205ENST00000557884 BNIP2Q12982 314 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 NPTX1Q15818 432 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 RANBP3LQ86VV4 465 aaPredicted RBP12.86□□□□□ -0.35
USP3-205ENST00000557884 OR6T1Q8NGN1 323 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 MBD3L2Q8NHZ7 208 aaPredicted RBP12.86□□□□□ -0.35
USP3-205ENST00000557884 RNF217Q8TC41 542 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 SLC25A43Q8WUT9 341 aaPredicted RBP12.86□□□□□ -0.35
USP3-205ENST00000557884 PROX1Q92786 737 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 FAM162AQ96A26 154 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 C3orf49Q96BT1 292 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 INTS12Q96CB8 462 aaKnown RBP12.86□□□□□ -0.35
USP3-205ENST00000557884 TPD52L3Q96J77 140 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 UCN2Q96RP3 112 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 TM9SF2Q99805 663 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 ZNF559Q9BR84 538 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 PRRG4Q9BZD6 226 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 TRIM2Q9C040 744 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 NDE1Q9NXR1 346 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 TESQ9UGI8 421 aaKnown RBP12.86□□□□□ -0.35
USP3-205ENST00000557884 MCTS1Q9ULC4 181 aaKnown RBP12.86□□□□□ -0.35
USP3-205ENST00000557884 ZNF175Q9Y473 711 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 SPTAN1Q13813 2472 aaKnown RBP12.86□□□□□ -0.35
USP3-205ENST00000557884 HECTD1Q9ULT8 2610 aa12.86□□□□□ -0.35
USP3-205ENST00000557884 MYO7BQ6PIF6 2116 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 IGHV3-15A0A0B4J1V0 119 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 ZC3H12DA2A288 527 aaKnown RBP12.85□□□□□ -0.35
USP3-205ENST00000557884 HSPB2A8KAH6 182 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 TMEM229AB2RXF0 380 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 AQP8O94778 261 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 ZNF682O95780 498 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 C8BP07358 591 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 TMIGD3P0DMS9 266 aaPredicted RBP12.85□□□□□ -0.35
USP3-205ENST00000557884 CHRNB4P30926 498 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 FOXF2Q12947 444 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 MYBPHQ13203 477 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 OR1Q1Q15612 314 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 HSPB2Q16082 182 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 SAMD4BQ5PRF9 694 aaKnown RBP12.85□□□□□ -0.35
USP3-205ENST00000557884 XKRXQ6PP77 449 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 ATG4DQ86TL0 474 aaPredicted RBP12.85□□□□□ -0.35
USP3-205ENST00000557884 CARM1Q86X55 608 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 LIX1LQ8IVB5 337 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 CA5BP1Q8WTZ4 195 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 RASSF5Q8WWW0 418 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 ASB5Q8WWX0 329 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 ROBO4Q8WZ75 1007 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 ARL5BQ96KC2 179 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 MCHR1Q99705 422 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 UCK2Q9BZX2 261 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 TMEM27Q9HBJ8 222 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 TIGARQ9NQ88 270 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 BAG5Q9UL15 447 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 CLEC4AQ9UMR7 237 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 SLC9A8Q9Y2E8 581 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 SH3GLB1Q9Y371 365 aa12.85□□□□□ -0.35
USP3-205ENST00000557884 DIDO1Q9BTC0 2240 aaKnown RBP12.85□□□□□ -0.35
USP3-205ENST00000557884 CPSF4LA6NMK7 179 aaKnown RBP12.84□□□□□ -0.35
USP3-205ENST00000557884 RCBTB2O95199 551 aa12.84□□□□□ -0.35
USP3-205ENST00000557884 CLDN1O95832 211 aa12.84□□□□□ -0.35
USP3-205ENST00000557884 SERPINA1P01009 418 aa12.84□□□□□ -0.35
USP3-205ENST00000557884 GGT1P19440 569 aa12.84□□□□□ -0.35
USP3-205ENST00000557884 KLK2P20151 261 aa12.84□□□□□ -0.35
USP3-205ENST00000557884 PTNP21246 168 aa12.84□□□□□ -0.35
USP3-205ENST00000557884 BMP5P22003 454 aa12.84□□□□□ -0.35
USP3-205ENST00000557884 HTR1EP28566 365 aa12.84□□□□□ -0.35
USP3-205ENST00000557884 OR1E2P47887 323 aa12.84□□□□□ -0.35
USP3-205ENST00000557884 DIO1P49895 249 aa12.84□□□□□ -0.35
USP3-205ENST00000557884 OR2B6P58173 313 aa12.84□□□□□ -0.35
USP3-205ENST00000557884 SIRPAP78324 504 aa12.84□□□□□ -0.35
USP3-205ENST00000557884 ZNF239Q16600 458 aaKnown RBP12.84□□□□□ -0.35
USP3-205ENST00000557884 ALG10BQ5I7T1 473 aa12.84□□□□□ -0.35
USP3-205ENST00000557884 TMPPEQ6ZT21 453 aa12.84□□□□□ -0.35
USP3-205ENST00000557884 VTCN1Q7Z7D3 282 aa12.84□□□□□ -0.35
USP3-205ENST00000557884 DDIT4LQ96D03 193 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms