RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268		A0A1W2PPL8	197 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	SYNDIG1L	A6NDD5	238 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	PROS1	P07225	676 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	NUP62	P37198	522 aa	Predicted RBP	13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	PPP1CA	P62136	330 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	TGM3	Q08188	693 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	TUSC1	Q2TAM9	212 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	TMEM35A	Q53FP2	167 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	ENTPD8	Q5MY95	495 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	CNIH2	Q6PI25	160 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	NRM	Q8IXM6	262 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	SRFBP1	Q8NEF9	429 aa	Known RBP	13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	PROKR2	Q8NFJ6	384 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	DIO2	Q92813	273 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	OTULIN	Q96BN8	352 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	WBP1	Q96G27	269 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	LINC00052	Q96N35	136 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	ENKD1	Q9H0I2	346 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	LDAH	Q9H6V9	325 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	SLC39A1	Q9NY26	324 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	KIF25	Q9UIL4	384 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	MAB21L2	Q9Y586	359 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	CABIN1	Q9Y6J0	2220 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	LOC105369274	A0A096LPK9	316 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	hCG_1807616	A0A1W2PRN6	198 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	RAB36	O95755	333 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	ACSM4	P0C7M7	580 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	GKN3P	P0CG01	181 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	ATXN8OS	P0DMR3	200 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	ANXA3	P12429	323 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	PVR	P15151	417 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	RAB3A	P20336	220 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	HOXA6	P31267	233 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	AHR	P35869	848 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	OMP	P47874	163 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	LSS	P48449	732 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	AFF3	P51826	1226 aa	Known RBP	13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	AGFG1	P52594	562 aa	Known RBP	13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	TRA2B	P62995	288 aa	Known RBP	13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	LGALSL	Q3ZCW2	172 aa	Predicted RBP	13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	TRMT12	Q53H54	448 aa	Known RBP	13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	LUZP2	Q86TE4	346 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	GKN2	Q86XP6	184 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	PM20D2	Q8IYS1	436 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	OR4N4	Q8N0Y3	316 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	MFSD9	Q8NBP5	474 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	TMEM163	Q8TC26	289 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	RADIL	Q96JH8	1075 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	C10orf90	Q96M02	699 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	ZSCAN32	Q9NX65	697 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	ZNF222	Q9UK12	451 aa		13.85	□□□□□ -0.19
CHFR-223	ENST00000544268	ZNF98	A6NK75	572 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	LDB3	O75112	727 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	LIMS3	P0CW19	117 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	LIMS4	P0CW20	117 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	TYRP1	P17643	537 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	STOM	P27105	288 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	TSPAN7	P41732	249 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	HNRNPK	P61978	463 aa	Known RBP eCLIP	13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	P2RY14	Q15391	338 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	DEFB133	Q30KQ1	61 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	FBXO42	Q6P3S6	717 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	OR11H7	Q8NGC8	314 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	RSC1A1	Q92681	617 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	SGK3	Q96BR1	496 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	C1GALT1C1	Q96EU7	318 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	ZNF764	Q96H86	408 aa	Predicted RBP	13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	KCTD7	Q96MP8	289 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	PINK1	Q9BXM7	581 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	KCMF1	Q9P0J7	381 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	ADAM30	Q9UKF2	790 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	TP53BP1	Q12888	1972 aa	Predicted RBP	13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	FRYL	O94915	3013 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268		A0A0G2JPF8	293 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	SHISA3	A0PJX4	238 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	FAM221B	A6H8Z2	402 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	C2orf74	A8MZ97	194 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	HNRNPCL2	B2RXH8	293 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	HNRNPCL3	B7ZW38	293 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	EMC8	O43402	210 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	UBXN7	O94888	489 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	HNRNPCL4	P0DMR1	293 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	TDGF1	P13385	188 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	MPI	P34949	423 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	SMS	P52788	366 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	SMIM11A	P58511	58 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	STXBP1	P61764	594 aa	Known RBP	13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	FABP5	Q01469	135 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	PUDP	Q08623	228 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	RUNX2	Q13950	521 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	IL18	Q14116	193 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	MAPK14	Q16539	360 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	ZNF791	Q3KP31	576 aa	Predicted RBP	13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	RNLS	Q5VYX0	342 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	FCRL6	Q6DN72	434 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	SLC27A4	Q6P1M0	643 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	FIGLA	Q6QHK4	219 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	TMEM64	Q6YI46	380 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	FRRS1	Q6ZNA5	592 aa		13.84	□□□□□ -0.19
CHFR-223	ENST00000544268	FAM92B	Q6ZTR7	304 aa		13.84	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms