RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CHRNA9Q9UGM1 479 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 SPIN1Q9Y657 262 aaPredicted RBP13.48□□□□□ -0.25
CPSF1-208ENST00000532560 UNC79Q9P2D8 2635 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 ADGRG4Q8IZF6 3080 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 LOC100653049A0A140TA62 436 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 PRORSD1PA6NEY8 169 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 EEF1E1-BLOC1S5C9J1V9 151 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 SYT5O00445 386 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 EEF1E1O43324 174 aaKnown RBP13.47□□□□□ -0.25
CPSF1-208ENST00000532560 KRT34O76011 436 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 GKN3PP0CG01 181 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 FKBP2P26885 142 aaKnown RBP13.47□□□□□ -0.25
CPSF1-208ENST00000532560 ACAA2P42765 397 aaKnown RBP13.47□□□□□ -0.25
CPSF1-208ENST00000532560 SLC1A3P43003 542 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 POLR2HP52434 150 aaKnown RBP13.47□□□□□ -0.25
CPSF1-208ENST00000532560 PCBP3P57721 371 aaKnown RBP13.47□□□□□ -0.25
CPSF1-208ENST00000532560 CARD18P57730 90 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 SYT14P1Q58G82 188 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 MTDHQ86UE4 582 aaKnown RBP13.47□□□□□ -0.25
CPSF1-208ENST00000532560 SLC30A8Q8IWU4 369 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 ATP6V1C2Q8NEY4 427 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 RNF128Q8TEB7 428 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 LRRC46Q96FV0 321 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 GMPPAQ96IJ6 420 aaPredicted RBP13.47□□□□□ -0.25
CPSF1-208ENST00000532560 ZNF607Q96SK3 696 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 SRXN1Q9BYN0 137 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 PRRG4Q9BZD6 226 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 CTPS2Q9NRF8 586 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 GID8Q9NWU2 228 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 FOXD3Q9UJU5 478 aaPredicted RBP13.47□□□□□ -0.25
CPSF1-208ENST00000532560 PACSIN3Q9UKS6 424 aa13.47□□□□□ -0.25
CPSF1-208ENST00000532560 T-ENOLP0DO92 83 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 PCGF2P35227 344 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 KIR2DL2P43627 348 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-208ENST00000532560 GZMMP51124 257 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 MAP2K6P52564 334 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 AGFG1P52594 562 aaKnown RBP13.46□□□□□ -0.25
CPSF1-208ENST00000532560 RAC3P60763 192 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 RABL3Q5HYI8 236 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 WBP2NLQ6ICG8 309 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 PPP4R4Q6NUP7 873 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 MEX3BQ6ZN04 569 aaKnown RBP13.46□□□□□ -0.25
CPSF1-208ENST00000532560 ADGRG3Q86Y34 549 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 DMRTC2Q8IXT2 367 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-208ENST00000532560 ZZZ3Q8IYH5 903 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 POU5F2Q8N7G0 328 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 BHLHE22Q8NFJ8 381 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-208ENST00000532560 OR10A6Q8NH74 314 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 RNASE6Q93091 150 aaKnown RBP13.46□□□□□ -0.25
CPSF1-208ENST00000532560 SLC7A6OSQ96CW6 309 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-208ENST00000532560 OR5B2Q96R09 309 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 BTBD10Q9BSF8 475 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 RSPO3Q9BXY4 272 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-208ENST00000532560 ADAM19Q9H013 955 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 GLRX2Q9NS18 164 aa13.46□□□□□ -0.25
CPSF1-208ENST00000532560 PKDREJQ9NTG1 2253 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 TMED7-TICAM2A0A0A6YYA0 188 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 A0A1W2PNR3 127 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 MSTNO14793 375 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 ZNF208O43345 1280 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 SS18L1O75177 396 aaPredicted RBP13.45□□□□□ -0.26
CPSF1-208ENST00000532560 SERPINB7O75635 380 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 COX4I1P13073 169 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 PRG2P13727 222 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 TACR3P29371 465 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 AQP1P29972 269 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 PEX19P40855 299 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 CLK1P49759 484 aaKnown RBP13.45□□□□□ -0.26
CPSF1-208ENST00000532560 COPZ1P61923 177 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 VWA1Q6PCB0 445 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 TMPPEQ6ZT21 453 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 FAM214BQ7L5A3 538 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 CALHM3Q86XJ0 350 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 TREML1Q86YW5 311 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 CNEP1R1Q8N9A8 125 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 RCN3Q96D15 328 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 STARD4Q96DR4 205 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 REXO5Q96IC2 774 aaKnown RBP13.45□□□□□ -0.26
CPSF1-208ENST00000532560 RSRC1Q96IZ7 334 aaKnown RBP13.45□□□□□ -0.26
CPSF1-208ENST00000532560 SLC24A3Q9HC58 644 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 OSGIN1Q9UJX0 560 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 TMED7Q9Y3B3 224 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 EMC9Q9Y3B6 208 aa13.45□□□□□ -0.26
CPSF1-208ENST00000532560 MFN2O95140 757 aa13.44□□□□□ -0.26
CPSF1-208ENST00000532560 PLGP00747 810 aaPredicted RBP13.44□□□□□ -0.26
CPSF1-208ENST00000532560 CD8BP10966 210 aa13.44□□□□□ -0.26
CPSF1-208ENST00000532560 UQCRC1P31930 480 aa13.44□□□□□ -0.26
CPSF1-208ENST00000532560 DIO1P49895 249 aa13.44□□□□□ -0.26
CPSF1-208ENST00000532560 CSNK2A1P68400 391 aaPredicted RBP13.44□□□□□ -0.26
CPSF1-208ENST00000532560 SIRPAP78324 504 aa13.44□□□□□ -0.26
CPSF1-208ENST00000532560 RNPS1Q15287 305 aaKnown RBP13.44□□□□□ -0.26
CPSF1-208ENST00000532560 VMACQ2NL98 169 aa13.44□□□□□ -0.26
CPSF1-208ENST00000532560 INTS11Q5TA45 600 aaKnown RBP13.44□□□□□ -0.26
CPSF1-208ENST00000532560 GTF2IRD2BQ6EKJ0 949 aa13.44□□□□□ -0.26
CPSF1-208ENST00000532560 FCRLAQ7L513 359 aa13.44□□□□□ -0.26
CPSF1-208ENST00000532560 BTLAQ7Z6A9 289 aa13.44□□□□□ -0.26
CPSF1-208ENST00000532560 ARPINQ7Z6K5 226 aa13.44□□□□□ -0.26
CPSF1-208ENST00000532560 PATL1Q86TB9 770 aaKnown RBP13.44□□□□□ -0.26
CPSF1-208ENST00000532560 GTF2IRD2Q86UP8 949 aa13.44□□□□□ -0.26
CPSF1-208ENST00000532560 COMTD1Q86VU5 262 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 141.3 ms