RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CST1P01037 141 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 CD3EP07766 207 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 UBTFL6P0CB48 400 aaPredicted RBP6.72□□□□□ -1.33
CD44-228ENST00000528455 CCL3P10147 92 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 IFNGR1P15260 489 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 ELAVL4P26378 380 aaKnown RBP6.72□□□□□ -1.33
CD44-228ENST00000528455 HTR3AP46098 478 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 TNFSF10P50591 281 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 ARHGDIAP52565 204 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 SUMO3P55854 103 aaPredicted RBP6.72□□□□□ -1.33
CD44-228ENST00000528455 DLX5P56178 289 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 RGS8P57771 180 aaPredicted RBP6.72□□□□□ -1.33
CD44-228ENST00000528455 COPZ1P61923 177 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 ARG2P78540 354 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 VLDLRP98155 873 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 ST3GAL3Q11203 375 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 EPS8Q12929 822 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 SKP2Q13309 424 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 CBFBQ13951 182 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 OR1C1Q15619 314 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 CD226Q15762 336 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 HYAL4Q2M3T9 481 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 TIGD3Q6B0B8 471 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 WBP2NLQ6ICG8 309 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 OR2T5Q6IEZ7 315 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 ZNF613Q6PF04 617 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 ULK3Q6PHR2 472 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 POMZP3Q6PJE2 187 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 CBLN3Q6UW01 205 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 PLCZ1Q86YW0 608 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 RBM45Q8IUH3 476 aaKnown RBP6.72□□□□□ -1.33
CD44-228ENST00000528455 RNF113BQ8IZP6 322 aaKnown RBP6.72□□□□□ -1.33
CD44-228ENST00000528455 ZNF614Q8N883 585 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 FADS6Q8N9I5 356 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 WDSUB1Q8N9V3 476 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 TMEM178AQ8NBL3 297 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 MDS2Q8NDY4 140 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 OR4D11Q8NGI4 311 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 OR1J4Q8NGS1 313 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 OR2T29Q8NH02 315 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 B4GALNT2Q8NHY0 566 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 C9orf43Q8TAL5 461 aaPredicted RBP6.72□□□□□ -1.33
CD44-228ENST00000528455 GPR119Q8TDV5 335 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 PHF10Q8WUB8 498 aaKnown RBP6.72□□□□□ -1.33
CD44-228ENST00000528455 DNAJA4Q8WW22 397 aaPredicted RBP6.72□□□□□ -1.33
CD44-228ENST00000528455 TMEM234Q8WY98 164 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 NRBF2Q96F24 287 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 SCMH1Q96GD3 660 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 CENPNQ96H22 339 aaPredicted RBP6.72□□□□□ -1.33
CD44-228ENST00000528455 SIGLEC12Q96PQ1 595 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 MCHR1Q99705 422 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 FAM173AQ9BQD7 235 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 WFDC6Q9BQY6 131 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 OSBPL10Q9BXB5 764 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 ANKRD19PQ9H560 264 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 PTGES2Q9H7Z7 377 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 NMNAT1Q9HAN9 279 aaPredicted RBP6.72□□□□□ -1.33
CD44-228ENST00000528455 C12orf10Q9HB07 376 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 AGPAT4Q9NRZ5 378 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 ACER3Q9NUN7 267 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 AP5S1Q9NUS5 200 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 ANKRD10Q9NXR5 420 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 PLA2G3Q9NZ20 509 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 KLRF1Q9NZS2 232 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 STX18Q9P2W9 335 aaKnown RBP6.72□□□□□ -1.33
CD44-228ENST00000528455 TESQ9UGI8 421 aaKnown RBP6.72□□□□□ -1.33
CD44-228ENST00000528455 RIMS3Q9UJD0 308 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 A4GNTQ9UNA3 340 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 CARD8Q9Y2G2 431 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 WIF1Q9Y5W5 379 aa6.72□□□□□ -1.33
CD44-228ENST00000528455 TNRC6AQ8NDV7 1962 aaKnown RBP6.71□□□□□ -1.33
CD44-228ENST00000528455 A0A087WZY1 265 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 TRAV17A0A0B4J275 112 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 A0A1W2PRQ8 180 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 TRAPPC13A5PLN9 417 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 ANKUB1A6NFN9 424 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 ETV2O00321 342 aaPredicted RBP6.71□□□□□ -1.34
CD44-228ENST00000528455 GNGT2O14610 69 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 FFAR1O14842 300 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 ADAMDEC1O15204 470 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 NME2P1O60361 137 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 SEMA7AO75326 666 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 TIPRLO75663 272 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 CYP7B1O75881 506 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 OR5F1O95221 314 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 LDLRP01130 860 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 GKN3PP0CG01 181 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 PRG2P13727 222 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 ANPEPP15144 967 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 TNFRSF1BP20333 461 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 GCKP35557 465 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 GDNFP39905 211 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 APOBEC1P41238 236 aaKnown RBP6.71□□□□□ -1.34
CD44-228ENST00000528455 SLC1A3P43003 542 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 IDH2P48735 452 aaKnown RBP6.71□□□□□ -1.34
CD44-228ENST00000528455 ERFP50548 548 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 DSCR4P56555 118 aaPredicted RBP6.71□□□□□ -1.34
CD44-228ENST00000528455 ZNF117Q03924 483 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 SLC34A1Q06495 639 aa6.71□□□□□ -1.34
CD44-228ENST00000528455 PIN1Q13526 163 aaPredicted RBP6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms