RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 TRIM15Q9C019 465 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 ROGDIQ9GZN7 287 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 RAB33BQ9H082 229 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 SEMA6AQ9H2E6 1030 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 MUC13Q9H3R2 512 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 LRRN3Q9H3W5 708 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 ANKRA2Q9H9E1 313 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 ANKHQ9HCJ1 492 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 LYRM4Q9HD34 91 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 EQTNQ9NQ60 294 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 RXFP3Q9NSD7 469 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 GIMAP4Q9NUV9 329 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 TAS2R9Q9NYW1 312 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 BCAP29Q9UHQ4 241 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 PHF11Q9UIL8 331 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 SERTAD3Q9UJW9 196 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 ANAPC2Q9UJX6 822 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 RAB23Q9ULC3 237 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 PLCL2Q9UPR0 1127 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 ENTPD4Q9Y227 616 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 TMEM184BQ9Y519 407 aaPredicted RBP3.85□□□□□ -1.79
CD44-226ENST00000527889 AP4S1Q9Y587 144 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 SLC22A7Q9Y694 548 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 MAU2Q9Y6X3 613 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 COMMD3-BMI1R4GMX3 469 aa3.85□□□□□ -1.79
CD44-226ENST00000527889 PTPRQQ9UMZ3 2332 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 DMXL2Q8TDJ6 3036 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 CELSR3Q9NYQ7 3312 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 IGHV5-10-1A0A0J9YXX1 117 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 LNP1A1A4G5 178 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 HYKKA2RU49 373 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 FAM149AA5PLN7 773 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 AGAP5A6NIR3 686 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 FAM90A7PA6NKC0 464 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 FAM90A22PA8MWA6 464 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 FAM90A12PA8MX19 464 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 FAM90A23PA8MXZ1 464 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 ZNF879B4DU55 563 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 CYR61O00622 381 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 TXNDC9O14530 226 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 TSPAN4O14817 238 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 NKX2-8O15522 239 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 CHST10O43529 356 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 FOXS1O43638 330 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 FGF17O60258 216 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 SRPX2O60687 465 aaPredicted RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 CDC14BO60729 498 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 GMNNO75496 209 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 JRKO75564 520 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 CDC123O75794 336 aaPredicted RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 OR2B3O76000 313 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 KRT75O95678 551 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 CPNE6O95741 557 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 ZNF682O95780 498 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 SERPINA1P01009 418 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 OPN1SWP03999 348 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 INHBBP09529 407 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 OR12D1P0DN82 309 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 RNH1P13489 461 aaKnown RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 ANXA8P13928 327 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 CPMP14384 443 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 DDX5P17844 614 aaKnown RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 GPX2P18283 190 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 NELFEP18615 380 aaKnown RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 PI3P19957 117 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 AQP1P29972 269 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 TLX1P31314 330 aaPredicted RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 EVI2BP34910 448 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 PCGF2P35227 344 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 VHLP40337 213 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 OR1D4P47884 311 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 CCT3P49368 545 aaKnown RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 XKP51811 444 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 ARHGDIBP52566 201 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 GBX2P52951 348 aaPredicted RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 RAB38P57729 211 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 LINC00310P59036 64 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 RPS3AP61247 264 aaKnown RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 RPL15P61313 204 aaKnown RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 HSD11B2P80365 405 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 FOLH1Q04609 750 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 DCTN2Q13561 401 aaKnown RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 DYRK1AQ13627 763 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 LASP1Q14847 261 aaKnown RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 ZMYND11Q15326 602 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 SF3A2Q15428 464 aaKnown RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 NDUFA9Q16795 377 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 VMACQ2NL98 169 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 KRTAP21-3Q3LHN1 58 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 AASDHQ4L235 1098 aaPredicted RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 MTX3Q5HYI7 312 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 MANEAQ5SRI9 462 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 GCNT6Q5T4J0 391 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 C1orf189Q5VU69 101 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 SAXO2Q658L1 398 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 OR52E8Q6IFG1 317 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 TMEM71Q6P5X7 295 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 WDR74Q6RFH5 385 aaPredicted RBP3.84□□□□□ -1.79
CD44-226ENST00000527889 SLC22A25Q6T423 547 aa3.84□□□□□ -1.79
CD44-226ENST00000527889 TMEM107Q6UX40 140 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms