RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 BCL2L10Q9HD36 194 aa18.37■□□□□ 0.53
VPS28-206ENST00000526734 ZNF724A8MTY0 619 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 SMAD9O15198 467 aaKnown RBP18.36■□□□□ 0.53
VPS28-206ENST00000526734 SASH3O75995 380 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 RAF1P04049 648 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 IST1P53990 364 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 RASGEF1BQ0VAM2 473 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 AGKQ53H12 422 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 TFAP2EQ6VUC0 442 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 STAC2Q6ZMT1 411 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 MTDHQ86UE4 582 aaKnown RBP18.36■□□□□ 0.53
VPS28-206ENST00000526734 TUSC5Q8IXB3 177 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 NRGNQ92686 78 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 DDIT4LQ96D03 193 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 MBD6Q96DN6 1003 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 SPATA9Q9BWV2 254 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 C12orf49Q9H741 205 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 PLEKHF2Q9H8W4 249 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 MRGBPQ9NV56 204 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 EMC3Q9P0I2 261 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 TRAPPC4Q9Y296 219 aa18.36■□□□□ 0.53
VPS28-206ENST00000526734 ZNF443Q9Y2A4 671 aaPredicted RBP18.36■□□□□ 0.53
VPS28-206ENST00000526734 HEATR5AQ86XA9 2040 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 TMED7-TICAM2A0A0A6YYA0 188 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 A0A1W2PP18 115 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 AP3D1O14617 1153 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 ADAM11O75078 769 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 FESP07332 822 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 ART1P52961 327 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 COPZ1P61923 177 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 METTL21CQ5VZV1 264 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 ABLIM2Q6H8Q1 611 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 ZNF836Q6ZNA1 936 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 ADGRG3Q86Y34 549 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 STEAP2Q8NFT2 490 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 PIGXQ8TBF5 258 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 TSPEARQ8WU66 669 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 SLC52A3Q9NQ40 469 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 TMED7Q9Y3B3 224 aa18.35■□□□□ 0.53
VPS28-206ENST00000526734 C5orf58C9J3I9 102 aa18.34■□□□□ 0.53
VPS28-206ENST00000526734 GPR171O14626 319 aa18.34■□□□□ 0.53
VPS28-206ENST00000526734 CNOT4O95628 575 aaKnown RBP18.34■□□□□ 0.53
VPS28-206ENST00000526734 ETS2P15036 469 aa18.34■□□□□ 0.53
VPS28-206ENST00000526734 P2RY6Q15077 328 aa18.34■□□□□ 0.53
VPS28-206ENST00000526734 NUFIP2Q7Z417 695 aaKnown RBP18.34■□□□□ 0.53
VPS28-206ENST00000526734 VRK2Q86Y07 508 aa18.34■□□□□ 0.53
VPS28-206ENST00000526734 ALPK1Q96QP1 1244 aa18.34■□□□□ 0.53
VPS28-206ENST00000526734 CXXC4Q9H2H0 198 aa18.34■□□□□ 0.53
VPS28-206ENST00000526734 SLC25A37Q9NYZ2 338 aa18.34■□□□□ 0.53
VPS28-206ENST00000526734 TMEM181Q9P2C4 612 aa18.34■□□□□ 0.53
VPS28-206ENST00000526734 LEF1Q9UJU2 399 aaPredicted RBP18.34■□□□□ 0.53
VPS28-206ENST00000526734 OSGIN1Q9UJX0 560 aa18.34■□□□□ 0.53
VPS28-206ENST00000526734 CSMD2Q7Z408 3487 aa18.33■□□□□ 0.53
VPS28-206ENST00000526734 IGKV3D-15A0A087WSY6 115 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 TRBV5-3A0A0A0MS03 114 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 IGHV3-15A0A0B4J1V0 119 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 DEFB108AA8MXU0 73 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 EVPLLA8MZ36 301 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 EIF1BO60739 113 aaKnown RBP18.33■□□□□ 0.52
VPS28-206ENST00000526734 NCF2P19878 526 aaPredicted RBP18.33■□□□□ 0.52
VPS28-206ENST00000526734 TACR3P29371 465 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 OR3A2P47893 321 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 POU4F3Q15319 338 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 BEX5Q5H9J7 111 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 GCNT6Q5T4J0 391 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 WBP2NLQ6ICG8 309 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 GABRG1Q8N1C3 465 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 SPATA5L1Q9BVQ7 753 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 ACTR6Q9GZN1 396 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 ADAM19Q9H013 955 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 NPHS2Q9NP85 383 aa18.33■□□□□ 0.52
VPS28-206ENST00000526734 CCM2LQ9NUG4 571 aaPredicted RBP18.33■□□□□ 0.52
VPS28-206ENST00000526734 ING1Q9UK53 422 aaPredicted RBP18.33■□□□□ 0.52
VPS28-206ENST00000526734 MPDZO75970 2070 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 PGM3O95394 542 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 ARAFP10398 606 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 NR1H2P55055 460 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 SLC35A1P78382 337 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 KEAP1Q14145 624 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 ZNF311Q5JNZ3 666 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 RPS26P11Q5JNZ5 115 aaPredicted RBP18.32■□□□□ 0.52
VPS28-206ENST00000526734 PAGE3Q5JUK9 113 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 Q6ZT83 130 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 SSX8Q7RTT4 187 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 GALNT5Q7Z7M9 940 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 KRT73Q86Y46 540 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 MSRB3Q8IXL7 192 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 ARL5BQ96KC2 179 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 POTEKPQ9BYX7 375 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 LIME1Q9H400 295 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 ZNF385DQ9H6B1 395 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 TMEM38AQ9H6F2 299 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 RLIMQ9NVW2 624 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 C6orf203Q9P0P8 240 aaPredicted RBP18.32■□□□□ 0.52
VPS28-206ENST00000526734 DCTN4Q9UJW0 460 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 PLEKHA6Q9Y2H5 1048 aa18.32■□□□□ 0.52
VPS28-206ENST00000526734 GCM2O75603 506 aaPredicted RBP18.31■□□□□ 0.52
VPS28-206ENST00000526734 ATE1O95260 518 aa18.31■□□□□ 0.52
VPS28-206ENST00000526734 NUDT7P0C024 238 aa18.31■□□□□ 0.52
VPS28-206ENST00000526734 TROVE2P10155 538 aaKnown RBP eCLIP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms