RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ADAM11O75078 769 aa13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 ANP32DO95626 131 aa13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 IL6P05231 212 aa13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 OR3A2P47893 321 aa13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 NR1H2P55055 460 aa13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 TXNL4AP83876 142 aaKnown RBP13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 GSTA3Q16772 222 aa13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 SFRP5Q5T4F7 317 aa13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 OR9I1Q8NGQ6 314 aa13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 ZNF75CPQ92670 426 aaPredicted RBP13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 PERPQ96FX8 193 aa13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 ARL5BQ96KC2 179 aa13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 HDHD5Q9BXW7 423 aa13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 OR11A1Q9GZK7 315 aa13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 ZIM2Q9NZV7 527 aa13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 FN1P02751 2386 aaKnown RBP13.94□□□□□ -0.18
CCDC88B-205ENST00000472524 TRIM64A6NGJ6 449 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 TRIM64BA6NI03 449 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 AGAP5A6NIR3 686 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 ZNF814B7Z6K7 855 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 SMAD7O15105 426 aaKnown RBP13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 UBDO15205 165 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 LYZL6O75951 148 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 ETFAP13804 333 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 IL7RP16871 459 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 EDNRAP25101 427 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 CRATP43155 626 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 ITGADQ13349 1161 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 GNA13Q14344 377 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 CAPRIN1Q14444 709 aaKnown RBP13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 TAB1Q15750 504 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 GTDC1Q4AE62 458 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 MRPL2Q5T653 305 aaKnown RBP13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 AGBL2Q5U5Z8 902 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 AP1ARQ63HQ0 302 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 ABLIM2Q6H8Q1 611 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 BHLHA15Q7RTS1 189 aaPredicted RBP13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 YTHDF3Q7Z739 585 aaKnown RBP13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 PRIMA1Q86XR5 153 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 CMIPQ8IY22 773 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 ZHX1-C8orf76Q96EF9 292 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 RMND5AQ9H871 391 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 P2RX2Q9UBL9 471 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 USH1CQ9Y6N9 552 aa13.93□□□□□ -0.18
CCDC88B-205ENST00000472524 TMED7-TICAM2A0A0A6YYA0 188 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 ZNF724A8MTY0 619 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 FAM171A2A8MVW0 826 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 KLF11O14901 512 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 BCHEP06276 602 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 DBIP07108 87 aaKnown RBP13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 RPS4Y1P22090 263 aaKnown RBP13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 PCSK6P29122 969 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 POLR2JP52435 117 aaKnown RBP13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 OR2B6P58173 313 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 DSTNP60981 165 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 P2RY6Q15077 328 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 STK11Q15831 433 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 C6orf10Q5SRN2 563 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 Q6ZT83 130 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 GALNT5Q7Z7M9 940 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 MTDHQ86UE4 582 aaKnown RBP13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 ADGRG3Q86Y34 549 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 PEX5LQ8IYB4 626 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 ZNF100Q8IYN0 542 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 MIER2Q8N344 545 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 VPS33AQ96AX1 596 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 AURKBQ96GD4 344 aaPredicted RBP13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 ITCHQ96J02 903 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 POTEKPQ9BYX7 375 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 MTHFD2LQ9H903 347 aaPredicted RBP13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 SDR39U1Q9NRG7 319 aaPredicted RBP13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 EMC3Q9P0I2 261 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 TMED7Q9Y3B3 224 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 HDGFL3Q9Y3E1 203 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 PLCE1Q9P212 2302 aa13.92□□□□□ -0.18
CCDC88B-205ENST00000472524 TMEM72A0PK05 275 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 KIAA1324LA8MWY0 1029 aaPredicted RBP13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 HS3ST1O14792 307 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 CLOCKO15516 846 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 PMS2P2O95744 297 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 IGHV3-9P01782 118 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 TACR3P29371 465 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 HTR3AP46098 478 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 POLR2HP52434 150 aaKnown RBP13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 MVDP53602 400 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 EPS8Q12929 822 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 MAPK11Q15759 364 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 RPS26P11Q5JNZ5 115 aaPredicted RBP13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 PRSS57Q6UWY2 283 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 ZNF836Q6ZNA1 936 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 MSANTD1Q6ZTZ1 278 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 VRK2Q86Y07 508 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 OR52P1PQ8NH57 321 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 HSD17B8Q92506 261 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 AKAP1Q92667 903 aaKnown RBP eCLIP13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 TMEM204Q9BSN7 226 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 TPT1P8Q9HAU6 139 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 NGBQ9NPG2 151 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 RLIMQ9NVW2 624 aa13.91□□□□□ -0.18
CCDC88B-205ENST00000472524 OSGIN1Q9UJX0 560 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms