RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 C16orf62Q7Z3J2 963 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 CAMK2N1Q7Z7J9 78 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 ANKRD23Q86SG2 305 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 KRTAP13-1Q8IUC0 172 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 MFSD6LQ8IWD5 586 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 RDH10Q8IZV5 341 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 GCNT2Q8N0V5 402 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 SVOPLQ8N434 492 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 OR5L2Q8NGL0 311 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 NANPQ8TBE9 248 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 BRSK1Q8TDC3 778 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 ACER1Q8TDN7 264 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 GIMAP1Q8WWP7 306 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 SLC13A3Q8WWT9 602 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 RAPGEF5Q92565 580 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 NDRG1Q92597 394 aaKnown RBP0.71□□□□□ -2.3
UBXN4-207ENST00000471246 FCGR1BQ92637 280 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 ARPC1AQ92747 370 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 FRZBQ92765 325 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 PINX1Q96BK5 328 aaKnown RBP0.71□□□□□ -2.3
UBXN4-207ENST00000471246 TIMD4Q96H15 378 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 HPDLQ96IR7 371 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 CCDC43Q96MW1 224 aaKnown RBP0.71□□□□□ -2.3
UBXN4-207ENST00000471246 RUFY1Q96T51 708 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 ATP6V0BQ99437 205 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 SPIN2AQ99865 258 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 SPIN2BQ9BPZ2 258 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 ACAT2Q9BWD1 397 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 CDC42EP4Q9H3Q1 356 aaKnown RBP0.71□□□□□ -2.3
UBXN4-207ENST00000471246 ACTR8Q9H981 624 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 CALHM2Q9HA72 323 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 YAE1D1Q9NRH1 226 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 CCL28Q9NRJ3 127 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 SMPD3Q9NY59 655 aaPredicted RBP0.71□□□□□ -2.3
UBXN4-207ENST00000471246 RDH8Q9NYR8 311 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 DEC1Q9P2X7 70 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 FETUBQ9UGM5 382 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 ATP6V1HQ9UI12 483 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 NUDCQ9Y266 331 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 YTHDF2Q9Y5A9 579 aaKnown RBP0.71□□□□□ -2.3
UBXN4-207ENST00000471246 CLCA3PQ9Y6N3 262 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 SPACA6W5XKT8 324 aa0.71□□□□□ -2.3
UBXN4-207ENST00000471246 COL27A1Q8IZC6 1860 aaPredicted RBP0.71□□□□□ -2.3
UBXN4-207ENST00000471246 PLEKHH1Q9ULM0 1364 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 SHANK1Q9Y566 2161 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 IGHV1OR21-1A0A087WYE8 117 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 IQANK1A0A1B0GTG1 560 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 FAM230AA0A1W2PPH8 454 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 A6NIZ1 184 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 SSX5O60225 188 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 TPST2O60704 377 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 B4GALT2O60909 372 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 N4BP1O75113 896 aaKnown RBP0.7□□□□□ -2.3
UBXN4-207ENST00000471246 SS18L1O75177 396 aaPredicted RBP0.7□□□□□ -2.3
UBXN4-207ENST00000471246 TOM1L1O75674 476 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 UGT2B17O75795 530 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 BCAS2O75934 225 aaPredicted RBP0.7□□□□□ -2.3
UBXN4-207ENST00000471246 C6orf47O95873 294 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 LGI1O95970 557 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 CA1P00915 261 aaPredicted RBP0.7□□□□□ -2.3
UBXN4-207ENST00000471246 IGF1P05019 195 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 RHOXF2BP0C7M4 288 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 CCDC192P0DO97 292 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 CELP19835 753 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 CYP2B6P20813 491 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 CALB2P22676 271 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 SHMT2P34897 504 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 NMUP48645 174 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 KPNA2P52292 529 aaKnown RBP0.7□□□□□ -2.3
UBXN4-207ENST00000471246 YBEYP58557 167 aaPredicted RBP0.7□□□□□ -2.3
UBXN4-207ENST00000471246 RAP1BP61224 184 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 CBX3Q13185 183 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 CHRFAM7AQ494W8 412 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 KRTAP13-2Q52LG2 175 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 BOLA3Q53S33 107 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 GPRC6AQ5T6X5 926 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 C12orf60Q5U649 245 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 C11orf71Q6IPW1 123 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 CCDC137Q6PK04 289 aaKnown RBP0.7□□□□□ -2.3
UBXN4-207ENST00000471246 Q6ZR03 302 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 PRSS41Q7RTY9 318 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 RABEPKQ7Z6M1 372 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 HMGN2P46Q86SG4 172 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 BCORP1Q8N888 145 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 FAM71CQ8NEG0 241 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 OR6C4Q8NGE1 309 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 OR9G1Q8NH87 305 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 UBALD1Q8TB05 177 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 DTX3LQ8TDB6 740 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 RPL3LQ92901 407 aaKnown RBP0.7□□□□□ -2.3
UBXN4-207ENST00000471246 TMEM186Q96B77 213 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 AKR1E2Q96JD6 320 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 LINC00477Q96M19 166 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 VPS35Q96QK1 796 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 TAAR1Q96RJ0 339 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 TESK2Q96S53 571 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 HIST1H4GQ99525 98 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 NPAS2Q99743 824 aa0.7□□□□□ -2.3
UBXN4-207ENST00000471246 RIOK1Q9BRS2 568 aaKnown RBP0.7□□□□□ -2.3
UBXN4-207ENST00000471246 ZNF670Q9BS34 389 aa0.7□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms