RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 A0A1W2PQ67 120 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 TMEM89A2RUT3 159 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 ARHGEF35A5YM69 484 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF233A6NK53 670 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 GOLGA8JA6NMD2 632 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 SLCO1B7G3V0H7 640 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 H0YCG3 227 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 SLC1A7O00341 560 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 E2F3O00716 465 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 HDAC3O15379 428 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 CLOCKO15516 846 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 SMAD6O43541 496 aaKnown RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 BUB1O43683 1085 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 MAGEC1O60732 1142 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 TOM1L1O75674 476 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 PALMO75781 387 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 NOL4O94818 638 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 DEXIO95424 95 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 BMP15O95972 392 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 UMODP07911 640 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 OCM2P0CE71 109 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 OCMP0CE72 109 aaPredicted RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 CALCBP10092 127 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 TNNI3P19429 210 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 HTR2AP28223 471 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 OTX2P32243 289 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 LONP1P36776 959 aaKnown RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 TNFSF9P41273 254 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 CDKN2AP42771 156 aaKnown RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 RPL5P46777 297 aaKnown RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 OR3A2P47893 321 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 EIF2B2P49770 351 aaKnown RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 NAA20P61599 178 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 TRA2BP62995 288 aaKnown RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 CDR2Q01850 454 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 SCRN3Q0VDG4 424 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 CDC20Q12834 499 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 TSC22D1Q15714 1073 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 CAMK4Q16566 473 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 ZSWIM7Q19AV6 140 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 GPAT3Q53EU6 434 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 XKR4Q5GH76 650 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 SLC25A53Q5H9E4 307 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 WDR38Q5JTN6 314 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 SPATA46Q5T0L3 261 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 ATP1A1-AS1Q5TC04 95 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 LYPLAL1Q5VWZ2 237 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 ARHGAP17Q68EM7 881 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 WBP2NLQ6ICG8 309 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 TMEM207Q6UWW9 146 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 CD300LGQ6UXG3 332 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 C17orf107Q6ZR85 190 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 USP43Q70EL4 1123 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 C12orf56Q8IXR9 622 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 SLC38A6Q8IZM9 456 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 BLIDQ8IZY5 108 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 FBXL16Q8N461 479 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 ARL14Q8N4G2 192 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 RFLNBQ8N5W9 214 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 FADS6Q8N9I5 356 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 OR5T2Q8NGG2 359 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 OR10G8Q8NGN5 311 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 OR13A1Q8NGR1 328 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 LHFPL5Q8TAF8 219 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 GIPC3Q8TF64 312 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 GATAD1Q8WUU5 269 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 APOBEC4Q8WW27 367 aaKnown RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 SLC5A11Q8WWX8 675 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 TM9SF4Q92544 642 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 RAPGEF5Q92565 580 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 SLC35C1Q96A29 364 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 PRICKLE1Q96MT3 831 aaPredicted RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF641Q96N77 438 aaPredicted RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 GABRG3Q99928 467 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 AGPAT1Q99943 283 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 GON7Q9BXV9 100 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 C6orf62Q9GZU0 229 aaPredicted RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 STMN4Q9H169 189 aaPredicted RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 SLC26A1Q9H2B4 701 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 OR51B5Q9H339 312 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 EHD1Q9H4M9 534 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 ZNF665Q9H7R5 613 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 SP140LQ9H930 580 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 ROPN1Q9HAT0 212 aaPredicted RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 GDF3Q9NR23 364 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 STARD5Q9NSY2 213 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 PAQR5Q9NXK6 330 aaPredicted RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 WRAP73Q9P2S5 460 aaPredicted RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 STX18Q9P2W9 335 aaKnown RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 ERVK-18Q9QC07 812 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 ATP6V1HQ9UI12 483 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 MRTO4Q9UKD2 239 aaKnown RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 MRPS7Q9Y2R9 242 aaKnown RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 WIPI2Q9Y4P8 454 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 KLF2Q9Y5W3 355 aaPredicted RBP3.55□□□□□ -1.84
HMGB3-203ENST00000430118 SAR1BQ9Y6B6 198 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 MYO16Q9Y6X6 1858 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 PTPN13Q12923 2485 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 ATMQ13315 3056 aa3.55□□□□□ -1.84
HMGB3-203ENST00000430118 CACNA1EQ15878 2313 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms