RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 PHOSPHO1Q8TCT1 267 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 GPR119Q8TDV5 335 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 PHF10Q8WUB8 498 aaKnown RBP8.31□□□□□ -1.08
VPS53-203ENST00000401468 FIG4Q92562 907 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 CNOT9Q92600 299 aaKnown RBP8.31□□□□□ -1.08
VPS53-203ENST00000401468 ZNF524Q96C55 264 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 SDCCAG3Q96C92 435 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 C1GALT1C1Q96EU7 318 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 JSRP1Q96MG2 331 aaPredicted RBP8.31□□□□□ -1.08
VPS53-203ENST00000401468 GNRHR2Q96P88 292 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 KLHDC3Q9BQ90 382 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 OR2B2Q9GZK3 357 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 ARMC7Q9H6L4 198 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 RLIMQ9NVW2 624 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 FRRS1LQ9P0K9 344 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 PPP4R1LQ9P1A2 415 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 RPS6KA6Q9UK32 745 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 FBXL2Q9UKC9 423 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 BAG5Q9UL15 447 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 POMPQ9Y244 141 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 ZNF835Q9Y2P0 537 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 HIVEP1P15822 2718 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 A0A087WZY1 265 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 A0A1B0GVC2 190 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 AQP12BA6NM10 295 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 KDM4EB2RXH2 506 aaPredicted RBP8.3□□□□□ -1.08
VPS53-203ENST00000401468 GSTA4O15217 222 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 HNRNPRO43390 633 aaKnown RBP8.3□□□□□ -1.08
VPS53-203ENST00000401468 TPST2O60704 377 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 SERPINA1P01009 418 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 COX6B1P14854 86 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 NCK1P16333 377 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 ATP6V1B2P21281 511 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 PTGS2P35354 604 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 MAGEA5P43359 124 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 GFRA1P56159 465 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 DSCR4P56555 118 aaPredicted RBP8.3□□□□□ -1.08
VPS53-203ENST00000401468 B3GALT5-AS1P59052 145 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 PPIAP62937 165 aaKnown RBP8.3□□□□□ -1.08
VPS53-203ENST00000401468 CBFBQ13951 182 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 NPTX1Q15818 432 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 PLPPR5Q32ZL2 321 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 NHSL2Q5HYW2 709 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 EMC4Q5J8M3 183 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 TSEN54Q7Z6J9 526 aaKnown RBP8.3□□□□□ -1.08
VPS53-203ENST00000401468 HMGN2P46Q86SG4 172 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 SLC22A16Q86VW1 577 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 WFDC8Q8IUA0 241 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 AQP12AQ8IXF9 295 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 GHDCQ8N2G8 530 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 FAM109AQ8N4B1 249 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 ZNF808Q8N4W9 903 aaPredicted RBP8.3□□□□□ -1.08
VPS53-203ENST00000401468 TMEM251Q8N6I4 163 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 OR4D11Q8NGI4 311 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 ST8SIA1Q92185 356 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 MCUR1Q96AQ8 359 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 DTNBP1Q96EV8 351 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 C7orf34Q96L11 122 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 NSMCE2Q96MF7 247 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 WFDC6Q9BQY6 131 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 POLR2J2Q9GZM3 115 aaKnown RBP8.3□□□□□ -1.08
VPS53-203ENST00000401468 POLR2J3Q9H1A7 115 aaKnown RBP8.3□□□□□ -1.08
VPS53-203ENST00000401468 PNPLA3Q9NST1 481 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 ALKBH4Q9NXW9 302 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 MED11Q9P086 117 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 B4GALT7Q9UBV7 327 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 ACAD8Q9UKU7 415 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 SAMD4AQ9UPU9 718 aaKnown RBP8.3□□□□□ -1.08
VPS53-203ENST00000401468 CARD8Q9Y2G2 431 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 SPG11Q96JI7 2443 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 MTORP42345 2549 aa8.3□□□□□ -1.08
VPS53-203ENST00000401468 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 TCRBV3S1A0A5B6 114 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 CFAP73A6NFT4 308 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 ACOT7O00154 380 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 GTPBP1O00178 669 aaKnown RBP8.29□□□□□ -1.08
VPS53-203ENST00000401468 HCRTR2O43614 444 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 SUSD5O60279 629 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 H2AFB1P0C5Y9 115 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 H2AFB2P0C5Z0 115 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 UBTFL6P0CB48 400 aaPredicted RBP8.29□□□□□ -1.08
VPS53-203ENST00000401468 PRG2P13727 222 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 ZNF17P17021 662 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 PRKCAP17252 672 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 HOXB6P17509 224 aaKnown RBP8.29□□□□□ -1.08
VPS53-203ENST00000401468 HTR2AP28223 471 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 MAGEA2P43356 314 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 MASP1P48740 699 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 NDUFAF6Q330K2 333 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 LRRC23Q53EV4 343 aaPredicted RBP8.29□□□□□ -1.08
VPS53-203ENST00000401468 OR5M10Q6IEU7 315 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 ZNF585AQ6P3V2 769 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 PLXDC2Q6UX71 529 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 Q6ZPB1 254 aaPredicted RBP8.29□□□□□ -1.08
VPS53-203ENST00000401468 ZNF550Q7Z398 422 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 PIWIL3Q7Z3Z3 882 aaKnown RBP8.29□□□□□ -1.08
VPS53-203ENST00000401468 VTCN1Q7Z7D3 282 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 DHFR2Q86XF0 187 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 LACC1Q8IV20 430 aa8.29□□□□□ -1.08
VPS53-203ENST00000401468 GTPBP8Q8N3Z3 284 aaPredicted RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms