RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 MAP4K2Q12851 820 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 WBP2NLQ6ICG8 309 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 CPOQ8IVL8 374 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 CLMPQ9H6B4 373 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 GPR45Q9Y5Y3 372 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 OR2C1O95371 312 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 CAPNS1P04632 268 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 PFKMP08237 780 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 CSF3P09919 207 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 ZNF100Q8IYN0 542 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 OR4E2Q8NGC2 313 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 BORCS6Q96GS4 357 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 B4GALT2O60909 372 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 SULT1C4O75897 302 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 FKBP2P26885 142 aaKnown RBP12.5□□□□□ -0.41
COL6A3-202ENST00000347401 F2RL1P55085 397 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 B3GNT8Q7Z7M8 397 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 OR1M1Q8NGA1 313 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 PEBP4Q96S96 227 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 TMPRSS5Q9H3S3 457 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 YTHDF2Q9Y5A9 579 aaKnown RBP12.5□□□□□ -0.41
COL6A3-202ENST00000347401 TAL1P17542 331 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-202ENST00000347401 MAOBP27338 520 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 CCR7P32248 378 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 DCAF7P61962 342 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 ADARB1P78563 741 aaKnown RBP12.5□□□□□ -0.41
COL6A3-202ENST00000347401 PAGE3Q5JUK9 113 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 RRAGCQ9HB90 399 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 HRH3Q9Y5N1 445 aa12.5□□□□□ -0.41
COL6A3-202ENST00000347401 SURF4O15260 269 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 CYTIPO60759 359 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 ZNF780AO75290 641 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-202ENST00000347401 FBLP22087 321 aaKnown RBP12.49□□□□□ -0.41
COL6A3-202ENST00000347401 TREML2Q5T2D2 321 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 HEPHL1Q6MZM0 1159 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 LCTLQ6UWM7 567 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 TMEM239Q8WW34 195 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 C20orf85Q9H1P6 137 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 C1GALT1Q9NS00 363 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 SERTAD4Q9NUC0 356 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 OLAHQ9NV23 265 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 KMT2EQ8IZD2 1858 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 DUX1O43812 170 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 CIDEAO60543 219 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 CLDN6P56747 220 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 HNF4GQ14541 408 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 PXDC1Q5TGL8 231 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 NRARPQ7Z6K4 114 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 PLXDC1Q8IUK5 500 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 KDF1Q8NAX2 398 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-202ENST00000347401 TSTD1Q8NFU3 115 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 M1APQ8TC57 530 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 GNPNAT1Q96EK6 184 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-202ENST00000347401 OR8D2Q9GZM6 311 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 OR5H15A6NDH6 313 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 OR5H14A6NHG9 310 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 OR5H1A6NKK0 313 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 SORDQ00796 357 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 ACSM1Q08AH1 577 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 DOC2AQ14183 400 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 SLC17A1Q14916 467 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 OR1S2Q8NGQ3 325 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 A0A0U1RQF3 1178 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 RAF1P04049 648 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 PRDX3P30048 256 aaKnown RBP12.49□□□□□ -0.41
COL6A3-202ENST00000347401 GPLD1P80108 840 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 PTPRCAPQ14761 206 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 SLC10A1Q14973 349 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 FAM111BQ6SJ93 734 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 ZNF561Q8N587 486 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 ZDHHC5Q9C0B5 715 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 AK6Q9Y3D8 172 aaKnown RBP12.49□□□□□ -0.41
COL6A3-202ENST00000347401 ADAMTS4O75173 837 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 PAX6P26367 422 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 TACR3P29371 465 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 SLC1A3P43003 542 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 PIGFQ07326 219 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 RTL10Q7L3V2 364 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 PRSS35Q8N3Z0 413 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 CSNK1A1LQ8N752 337 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 OR14L1PQ8NHC6 308 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 FAM122AQ96E09 287 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 MMABQ96EY8 250 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-202ENST00000347401 C4orf36Q96KX1 117 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 SORT1Q99523 831 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 SOX17Q9H6I2 414 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-202ENST00000347401 RYDENQ9NUL5 291 aaKnown RBP12.49□□□□□ -0.41
COL6A3-202ENST00000347401 NPY5RQ15761 445 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 BCL7AQ4VC05 210 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 STEAP3Q658P3 488 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 LANCL3Q6ZV70 420 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 EMID1Q96A84 441 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-202ENST00000347401 ISG20Q96AZ6 181 aaKnown RBP12.49□□□□□ -0.41
COL6A3-202ENST00000347401 HCAR1Q9BXC0 346 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 PBX4Q9BYU1 374 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 SLC39A9Q9NUM3 307 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 REV1Q9UBZ9 1251 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 GPX3P22352 226 aa12.49□□□□□ -0.41
COL6A3-202ENST00000347401 UBE2NP61088 152 aaKnown RBP12.49□□□□□ -0.41
COL6A3-202ENST00000347401 SIDT1Q9NXL6 827 aaKnown RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms