RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ZNF223Q9UK11 482 aaPredicted RBP20.68■□□□□ 0.9
TRIM28-202ENST00000341753 TBC1D3BA6NDS4 549 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 RPN2P04844 631 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 ANXA7P20073 488 aaKnown RBP20.67■□□□□ 0.9
TRIM28-202ENST00000341753 NAA10P41227 235 aaPredicted RBP20.67■□□□□ 0.9
TRIM28-202ENST00000341753 GBX2P52951 348 aaPredicted RBP20.67■□□□□ 0.9
TRIM28-202ENST00000341753 FAM109BQ6ICB4 259 aaPredicted RBP20.67■□□□□ 0.9
TRIM28-202ENST00000341753 NHLRC1Q6VVB1 395 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 SLITRK4Q8IW52 837 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 ESX1Q8N693 406 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 OR6M1Q8NGM8 313 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 INSM2Q96T92 566 aaPredicted RBP20.67■□□□□ 0.9
TRIM28-202ENST00000341753 CMC2Q9NRP2 79 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 ZBTB32Q9Y2Y4 487 aaPredicted RBP20.67■□□□□ 0.9
TRIM28-202ENST00000341753 RWDD3Q9Y3V2 267 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 ZNF780BQ9Y6R6 833 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 PPM1BO75688 479 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 FCER2P06734 321 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 PSMB10P40306 273 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 P2RY2P41231 377 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 GDI2P50395 445 aaKnown RBP20.67■□□□□ 0.9
TRIM28-202ENST00000341753 MRM1Q6IN84 353 aaKnown RBP20.67■□□□□ 0.9
TRIM28-202ENST00000341753 APOOLQ6UXV4 268 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 HDDC2Q7Z4H3 204 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 CMIPQ8IY22 773 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 ST8SIA4Q92187 359 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 TOE1Q96GM8 510 aaKnown RBP20.67■□□□□ 0.9
TRIM28-202ENST00000341753 FN3KQ9H479 309 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 SLC6A20Q9NP91 592 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 KRCC1Q9NPI7 259 aaPredicted RBP20.67■□□□□ 0.9
TRIM28-202ENST00000341753 FBXO34Q9NWN3 711 aa20.67■□□□□ 0.9
TRIM28-202ENST00000341753 L7N2F9 121 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 PSMB1P20618 241 aaKnown RBP20.66■□□□□ 0.9
TRIM28-202ENST00000341753 TCEA2Q15560 299 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 TRAM1Q15629 374 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 DUSP5Q16690 384 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 NHLRC3Q5JS37 347 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 OR5M10Q6IEU7 315 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 GRHL3Q8TE85 626 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 ZNF681Q96N22 645 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 ACTR6Q9GZN1 396 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 PIPOXQ9P0Z9 390 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 APOBEC3BQ9UH17 382 aaKnown RBP20.66■□□□□ 0.9
TRIM28-202ENST00000341753 OR1A2Q9Y585 309 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 HNRNPA1P09651 372 aaKnown RBP eCLIP20.66■□□□□ 0.9
TRIM28-202ENST00000341753 RAG2P55895 527 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 BTN3A2P78410 334 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 OC90Q02509 493 aaPredicted RBP20.66■□□□□ 0.9
TRIM28-202ENST00000341753 DPTQ07507 201 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 ELAVL3Q14576 367 aaKnown RBP20.66■□□□□ 0.9
TRIM28-202ENST00000341753 OR1Q1Q15612 314 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 ZNF433Q8N7K0 673 aaPredicted RBP20.66■□□□□ 0.9
TRIM28-202ENST00000341753 SP7Q8TDD2 431 aaPredicted RBP20.66■□□□□ 0.9
TRIM28-202ENST00000341753 MOAP1Q96BY2 351 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 MRPS30Q9NP92 439 aaKnown RBP20.66■□□□□ 0.9
TRIM28-202ENST00000341753 ABRACLQ9P1F3 81 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 KCNK6Q9Y257 313 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 SLC27A6Q9Y2P4 619 aa20.66■□□□□ 0.9
TRIM28-202ENST00000341753 SNRNP200O75643 2136 aaKnown RBP20.66■□□□□ 0.9
TRIM28-202ENST00000341753 SCN2AQ99250 2005 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 EDDM13A0A1B0GTR0 161 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 TCRBV16S1A1N1A0A5B0 115 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 IGLON5A6NGN9 336 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 OR52A4PA6NMU1 304 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 PEX12O00623 359 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 ICAM2P13598 275 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 NUP62P37198 522 aaPredicted RBP20.65■□□□□ 0.9
TRIM28-202ENST00000341753 TAS2R43P59537 309 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 ERVK-21P61565 698 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 ID2Q02363 134 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 ZIC1Q15915 447 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 TMEM35AQ53FP2 167 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 HSD17B12Q53GQ0 312 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 STPG1Q5TH74 334 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 MFSD12Q6NUT3 480 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 CFAP77Q6ZQR2 320 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 WFIKKN2Q8TEU8 576 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 BPIFA2Q96DR5 249 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 RADILQ96JH8 1075 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 TRPM6Q9BX84 2022 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 TRAPPC13A5PLN9 417 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 RIIAD1A6NNX1 92 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 PSMD9O00233 223 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 KHDRBS3O75525 346 aaKnown RBP20.65■□□□□ 0.9
TRIM28-202ENST00000341753 NT5EP21589 574 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 DYRK1AQ13627 763 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 HTR4Q13639 388 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 ERN2Q76MJ5 926 aaKnown RBP20.65■□□□□ 0.9
TRIM28-202ENST00000341753 ZNF765Q7L2R6 523 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 SHISA5Q8N114 240 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 CACYBPQ9HB71 228 aaKnown RBP20.65■□□□□ 0.9
TRIM28-202ENST00000341753 ZC4H2Q9NQZ6 224 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 PLEKHM1Q9Y4G2 1056 aa20.65■□□□□ 0.9
TRIM28-202ENST00000341753 SEZ6L2Q6UXD5 910 aa20.64■□□□□ 0.9
TRIM28-202ENST00000341753 UXS1Q8NBZ7 420 aa20.64■□□□□ 0.9
TRIM28-202ENST00000341753 KCT2Q8NC54 265 aa20.64■□□□□ 0.9
TRIM28-202ENST00000341753 OR52B4Q8NGK2 314 aa20.64■□□□□ 0.9
TRIM28-202ENST00000341753 CXorf40AQ8TE69 158 aa20.64■□□□□ 0.9
TRIM28-202ENST00000341753 PELI1Q96FA3 418 aa20.64■□□□□ 0.9
TRIM28-202ENST00000341753 MTHFD2LQ9H903 347 aaPredicted RBP20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms