RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 COX6A1P12074 109 aa15.03■□□□□ -0
USP4-201ENST00000265560 NOS3P29474 1203 aa15.03■□□□□ -0
USP4-201ENST00000265560 FOXK1P85037 733 aa15.03■□□□□ -0
USP4-201ENST00000265560 EGR4Q05215 589 aa15.03■□□□□ -0
USP4-201ENST00000265560 COL28A1Q2UY09 1125 aa15.03■□□□□ -0
USP4-201ENST00000265560 LINC00114Q6XXX2 140 aa15.03■□□□□ -0
USP4-201ENST00000265560 TMPRSS11FQ6ZWK6 438 aa15.03■□□□□ -0
USP4-201ENST00000265560 PRSS33Q8NF86 280 aa15.03■□□□□ -0
USP4-201ENST00000265560 IPCEF1Q8WWN9 437 aaPredicted RBP15.03■□□□□ -0
USP4-201ENST00000265560 SIGLEC11Q96RL6 698 aa15.03■□□□□ -0
USP4-201ENST00000265560 OR11A1Q9GZK7 315 aa15.03■□□□□ -0
USP4-201ENST00000265560 WDR54Q9H977 334 aa15.03■□□□□ -0
USP4-201ENST00000265560 KRCC1Q9NPI7 259 aaPredicted RBP15.03■□□□□ -0
USP4-201ENST00000265560 KLHL1Q9NR64 748 aa15.03■□□□□ -0
USP4-201ENST00000265560 PLCXD1Q9NUJ7 323 aa15.03■□□□□ -0
USP4-201ENST00000265560 CEP295Q9C0D2 2601 aa15.03■□□□□ -0
USP4-201ENST00000265560 EXPH5Q8NEV8 1989 aa15.03■□□□□ -0
USP4-201ENST00000265560 IGHV1-45A0A0A0MS14 117 aa15.03■□□□□ -0
USP4-201ENST00000265560 B4E171 279 aa15.03■□□□□ -0
USP4-201ENST00000265560 NADKO95544 446 aaPredicted RBP15.03■□□□□ -0
USP4-201ENST00000265560 SOX3P41225 446 aa15.03■□□□□ -0
USP4-201ENST00000265560 FOLR3P41439 243 aa15.03■□□□□ -0
USP4-201ENST00000265560 TSPAN7P41732 249 aa15.03■□□□□ -0
USP4-201ENST00000265560 FHL1Q13642 323 aa15.03■□□□□ -0
USP4-201ENST00000265560 KLHL12Q53G59 568 aa15.03■□□□□ -0
USP4-201ENST00000265560 TOR1AIP2Q8NFQ8 470 aa15.03■□□□□ -0
USP4-201ENST00000265560 OR4F15Q8NGB8 312 aa15.03■□□□□ -0
USP4-201ENST00000265560 OR5M1Q8NGP8 315 aa15.03■□□□□ -0
USP4-201ENST00000265560 TMEM163Q8TC26 289 aa15.03■□□□□ -0
USP4-201ENST00000265560 MCCC2Q9HCC0 563 aa15.03■□□□□ -0
USP4-201ENST00000265560 OR6C70A6NIJ9 312 aa15.03■□□□□ -0
USP4-201ENST00000265560 MCIDASD6RGH6 385 aa15.03■□□□□ -0
USP4-201ENST00000265560 MPZL2O60487 215 aa15.03■□□□□ -0
USP4-201ENST00000265560 ITGA10O75578 1167 aa15.03■□□□□ -0
USP4-201ENST00000265560 GUSBP08236 651 aa15.03■□□□□ -0
USP4-201ENST00000265560 JUNBP17275 347 aaPredicted RBP15.03■□□□□ -0
USP4-201ENST00000265560 LIPAP38571 399 aa15.03■□□□□ -0
USP4-201ENST00000265560 EFNB1P98172 346 aa15.03■□□□□ -0
USP4-201ENST00000265560 SOWAHCQ53LP3 525 aaPredicted RBP15.03■□□□□ -0
USP4-201ENST00000265560 ARSKQ6UWY0 536 aa15.03■□□□□ -0
USP4-201ENST00000265560 C6orf15Q6UXA7 325 aaPredicted RBP15.03■□□□□ -0
USP4-201ENST00000265560 OR52L1Q8NGH7 329 aa15.03■□□□□ -0
USP4-201ENST00000265560 DNAJA4Q8WW22 397 aaPredicted RBP15.03■□□□□ -0
USP4-201ENST00000265560 SLC25A36Q96CQ1 311 aa15.03■□□□□ -0
USP4-201ENST00000265560 OR51V1Q9H2C8 321 aa15.03■□□□□ -0
USP4-201ENST00000265560 OSGIN1Q9UJX0 560 aa15.03■□□□□ -0
USP4-201ENST00000265560 PCDHGA3Q9Y5H0 932 aa15.03■□□□□ -0
USP4-201ENST00000265560 TNFRSF10AO00220 468 aa15.02■□□□□ -0
USP4-201ENST00000265560 ADORA3P0DMS8 318 aa15.02■□□□□ -0
USP4-201ENST00000265560 RPL4P36578 427 aaKnown RBP15.02■□□□□ -0
USP4-201ENST00000265560 ATG4DQ86TL0 474 aaPredicted RBP15.02■□□□□ -0
USP4-201ENST00000265560 FAM26EQ8N5C1 309 aa15.02■□□□□ -0
USP4-201ENST00000265560 RASL10BQ96S79 203 aa15.02■□□□□ -0
USP4-201ENST00000265560 CCNB1IP1Q9NPC3 277 aa15.02■□□□□ -0
USP4-201ENST00000265560 FKBP14Q9NWM8 211 aa15.02■□□□□ -0
USP4-201ENST00000265560 TCFL5Q9UL49 500 aa15.02■□□□□ -0
USP4-201ENST00000265560 BHLHE40O14503 412 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 ADAM10O14672 748 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 SLC1A3P43003 542 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 LTBQ06643 244 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 QPRTQ15274 297 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 PLAG1Q6DJT9 500 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 OR4K13Q8NH42 304 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 MOSPD2Q8NHP6 518 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 TRUB1Q8WWH5 349 aaKnown RBP15.02□□□□□ -0.01
USP4-201ENST00000265560 SLC39A7Q92504 469 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 FGF11Q92914 225 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 SGTBQ96EQ0 304 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 TAAR9Q96RI9 348 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 TAPBPLQ9BX59 468 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 LAT2Q9GZY6 243 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 FN3KQ9H479 309 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 RERGLQ9H628 205 aa15.02□□□□□ -0.01
USP4-201ENST00000265560 CACNA1GO43497 2377 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 PTP4A3O75365 173 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 F13BP05160 661 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 TGM1P22735 817 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 ADH7P40394 386 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 FOXK2Q01167 660 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 BORAQ6PGQ7 559 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 B3GNT6Q6ZMB0 384 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 SIRT6Q8N6T7 355 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 NUBPLQ8TB37 319 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 RNFT2Q96EX2 444 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 Q96MT0 163 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 ERMAPQ96PL5 475 aaPredicted RBP15.01□□□□□ -0.01
USP4-201ENST00000265560 TBX5Q99593 518 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 PRR33A8MZF0 331 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 M0R082 166 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 LRRTM2O43300 516 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 TNFSF15O95150 251 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 ZNF182P17025 639 aaPredicted RBP15.01□□□□□ -0.01
USP4-201ENST00000265560 CD79BP40259 229 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 AQP2P41181 271 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 CTBP2P56545 445 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 STPG1Q5TH74 334 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 B3GNTL1Q67FW5 361 aaPredicted RBP15.01□□□□□ -0.01
USP4-201ENST00000265560 LHFPL3Q86UP9 236 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 SDR9C7Q8NEX9 313 aa15.01□□□□□ -0.01
USP4-201ENST00000265560 OR5L2Q8NGL0 311 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms