RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 TACO1Q9BSH4 297 aaKnown RBP16.43■□□□□ 0.22
CLN3-259ENST00000637551 EFCAB1Q9HAE3 211 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 C12orf10Q9HB07 376 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 CHRNA9Q9UGM1 479 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 ARL2BPQ9Y2Y0 163 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 KIAA1549Q9HCM3 1950 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 ITPR3Q14573 2671 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 SYT5O00445 386 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 SHOX2O60902 331 aaPredicted RBP16.42■□□□□ 0.22
CLN3-259ENST00000637551 COX4I1P13073 169 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 ZNF136P52737 540 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 COPZ1P61923 177 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 SRYQ05066 204 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 TFF3Q07654 80 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 TOMM34Q15785 309 aaPredicted RBP16.42■□□□□ 0.22
CLN3-259ENST00000637551 NDUFAF6Q330K2 333 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 CCDC80Q76M96 950 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 OLIG3Q7RTU3 272 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 CALHM3Q86XJ0 350 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 SLC43A2Q8N370 569 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 TNIP2Q8NFZ5 429 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 OR10D3Q8NH80 312 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 NFKBIDQ8NI38 313 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 ZNF563Q8TA94 476 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 PINK1Q9BXM7 581 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 HDGFL3Q9Y3E1 203 aa16.42■□□□□ 0.22
CLN3-259ENST00000637551 PRSS44E7EML9 344 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 EIF1AYO14602 144 aaKnown RBP16.41■□□□□ 0.22
CLN3-259ENST00000637551 SEC14L5O43304 696 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 CYP7B1O75881 506 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 TMIGD3P0DMS9 266 aaPredicted RBP16.41■□□□□ 0.22
CLN3-259ENST00000637551 IGFBP2P18065 325 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 ASCL1P50553 236 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 GZMMP51124 257 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 POLR2HP52434 150 aaKnown RBP16.41■□□□□ 0.22
CLN3-259ENST00000637551 MTPNP58546 118 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 RAC3P60763 192 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 CSNK2A1P68400 391 aaPredicted RBP16.41■□□□□ 0.22
CLN3-259ENST00000637551 GUSBP1Q15486 140 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 VMACQ2NL98 169 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 SYT14P1Q58G82 188 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 WBP2NLQ6ICG8 309 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 POMZP3Q6PJE2 187 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 UBQLNLQ8IYU4 475 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 C10orf111Q8N326 155 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 LSMEM1Q8N8F7 131 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 C9orf106Q8NAJ2 232 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 ECSITQ9BQ95 431 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 GPATCH1Q9BRR8 931 aaKnown RBP16.41■□□□□ 0.22
CLN3-259ENST00000637551 ADAM19Q9H013 955 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 ENKD1Q9H0I2 346 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 KLHL28Q9NXS3 571 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 JKAMPQ9P055 326 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 ARMCX1Q9P291 453 aa16.41■□□□□ 0.22
CLN3-259ENST00000637551 LOC100653049A0A140TA62 436 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 CLDN24A6NM45 220 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 GMFGO60234 142 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 FMO6PO60774 539 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 KRT34O76011 436 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 SYNGR4O95473 234 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 FAM107AO95990 144 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 SLC7A1P30825 629 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 ACAA2P42765 397 aaKnown RBP16.4■□□□□ 0.22
CLN3-259ENST00000637551 MERTKQ12866 999 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 PON3Q15166 354 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 RNPS1Q15287 305 aaKnown RBP16.4■□□□□ 0.22
CLN3-259ENST00000637551 SGCBQ16585 318 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 RPS26P11Q5JNZ5 115 aaPredicted RBP16.4■□□□□ 0.22
CLN3-259ENST00000637551 HBMQ6B0K9 141 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 C5orf46Q6UWT4 87 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 C6orf89Q6UWU4 347 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 NCCRP1Q6ZVX7 275 aaPredicted RBP16.4■□□□□ 0.22
CLN3-259ENST00000637551 P4HA3Q7Z4N8 544 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 VRK2Q86Y07 508 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 ZZZ3Q8IYH5 903 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 NAXEQ8NCW5 288 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 OR5M1Q8NGP8 315 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 GMPPAQ96IJ6 420 aaPredicted RBP16.4■□□□□ 0.22
CLN3-259ENST00000637551 KLHDC3Q9BQ90 382 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 TESQ9UGI8 421 aaKnown RBP16.4■□□□□ 0.22
CLN3-259ENST00000637551 TRAPPC4Q9Y296 219 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 CHST2Q9Y4C5 530 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 ZFHX3Q15911 3703 aa16.4■□□□□ 0.22
CLN3-259ENST00000637551 A0A0J9YW62 118 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 FAM220BPB1ANY3 271 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 HNRNPRO43390 633 aaKnown RBP16.39■□□□□ 0.21
CLN3-259ENST00000637551 EFNA2O43921 213 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 ADAM11O75078 769 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 BCAS1O75363 584 aaPredicted RBP16.39■□□□□ 0.21
CLN3-259ENST00000637551 MFN2O95140 757 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 PMS2P2O95744 297 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 IFNA14P01570 189 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 IL11P20809 199 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 TCEA1P23193 301 aaKnown RBP16.39■□□□□ 0.21
CLN3-259ENST00000637551 EIF1AXP47813 144 aaKnown RBP16.39■□□□□ 0.21
CLN3-259ENST00000637551 IDH2P48735 452 aaKnown RBP16.39■□□□□ 0.21
CLN3-259ENST00000637551 CARD18P57730 90 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 SORDQ00796 357 aa16.39■□□□□ 0.21
CLN3-259ENST00000637551 ZNF239Q16600 458 aaKnown RBP16.39■□□□□ 0.21
CLN3-259ENST00000637551 SWT1Q5T5J6 900 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms