RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 POLE3Q9NRF9 147 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 MRGBPQ9NV56 204 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 DTNAQ9Y4J8 743 aa16.89■□□□□ 0.29
CDX1-202ENST00000616154 H3BNH8 94 aa16.88■□□□□ 0.29
CDX1-202ENST00000616154 HS3ST1O14792 307 aa16.88■□□□□ 0.29
CDX1-202ENST00000616154 PLAUP00749 431 aa16.88■□□□□ 0.29
CDX1-202ENST00000616154 PGRP06401 933 aa16.88■□□□□ 0.29
CDX1-202ENST00000616154 ADH6P28332 368 aa16.88■□□□□ 0.29
CDX1-202ENST00000616154 TXNL4AP83876 142 aaKnown RBP16.88■□□□□ 0.29
CDX1-202ENST00000616154 ZNF239Q16600 458 aaKnown RBP16.88■□□□□ 0.29
CDX1-202ENST00000616154 FAM91A1Q658Y4 838 aa16.88■□□□□ 0.29
CDX1-202ENST00000616154 LILRA2Q8N149 483 aa16.88■□□□□ 0.29
CDX1-202ENST00000616154 CLEC4FQ8N1N0 589 aa16.88■□□□□ 0.29
CDX1-202ENST00000616154 TOR1AIP2Q8NFQ8 470 aa16.88■□□□□ 0.29
CDX1-202ENST00000616154 RNF128Q8TEB7 428 aa16.88■□□□□ 0.29
CDX1-202ENST00000616154 SAP130Q9H0E3 1048 aa16.88■□□□□ 0.29
CDX1-202ENST00000616154 C12orf49Q9H741 205 aa16.88■□□□□ 0.29
CDX1-202ENST00000616154 NPIPA5A0A0B4J1W7 369 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 NPIPA7E9PJI5 369 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 SLC22A2O15244 555 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 OIP5O43482 229 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 EIF4E2O60573 245 aaKnown RBP16.87■□□□□ 0.29
CDX1-202ENST00000616154 CCDC22O60826 627 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 STX11O75558 287 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 NTN1O95631 604 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 NPIPA8P0DM63 369 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 PCSK6P29122 969 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 SHC1P29353 583 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 P2RX1P51575 399 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 CARD18P57730 90 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 FOXF1Q12946 379 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 SQLEQ14534 574 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 SLC25A53Q5H9E4 307 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 CBLN3Q6UW01 205 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 PRIMA1Q86XR5 153 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 STEAP2Q8NFT2 490 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 PHOSPHO1Q8TCT1 267 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 CPNE4Q96A23 557 aaPredicted RBP16.87■□□□□ 0.29
CDX1-202ENST00000616154 OR51I1Q9H343 314 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 TIGARQ9NQ88 270 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 EXD2Q9NVH0 621 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 ZIM2Q9NZV7 527 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 KCNE5Q9UJ90 142 aa16.87■□□□□ 0.29
CDX1-202ENST00000616154 KIAA0513O60268 411 aa16.86■□□□□ 0.29
CDX1-202ENST00000616154 FCMRO60667 390 aa16.86■□□□□ 0.29
CDX1-202ENST00000616154 GCM2O75603 506 aaPredicted RBP16.86■□□□□ 0.29
CDX1-202ENST00000616154 SFTPDP35247 375 aa16.86■□□□□ 0.29
CDX1-202ENST00000616154 MAGEA8P43361 318 aa16.86■□□□□ 0.29
CDX1-202ENST00000616154 FUT5Q11128 374 aa16.86■□□□□ 0.29
CDX1-202ENST00000616154 RNPS1Q15287 305 aaKnown RBP16.86■□□□□ 0.29
CDX1-202ENST00000616154 MTDHQ86UE4 582 aaKnown RBP16.86■□□□□ 0.29
CDX1-202ENST00000616154 GABRG1Q8N1C3 465 aa16.86■□□□□ 0.29
CDX1-202ENST00000616154 ABHD3Q8WU67 409 aa16.86■□□□□ 0.29
CDX1-202ENST00000616154 ROBO4Q8WZ75 1007 aa16.86■□□□□ 0.29
CDX1-202ENST00000616154 SLC35A5Q9BS91 424 aa16.86■□□□□ 0.29
CDX1-202ENST00000616154 HDHD5Q9BXW7 423 aa16.86■□□□□ 0.29
CDX1-202ENST00000616154 SRXN1Q9BYN0 137 aa16.86■□□□□ 0.29
CDX1-202ENST00000616154 GP6Q9HCN6 339 aa16.86■□□□□ 0.29
CDX1-202ENST00000616154 KLHL13Q9P2N7 655 aa16.86■□□□□ 0.29
CDX1-202ENST00000616154 GPC6Q9Y625 555 aaPredicted RBP16.86■□□□□ 0.29
CDX1-202ENST00000616154 SERINC4A6NH21 518 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 GJE1A6NN92 205 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 EFNA2O43921 213 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 UGT2B17O75795 530 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 DCTN3O75935 186 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 CPSF4O95639 269 aaKnown RBP16.85■□□□□ 0.29
CDX1-202ENST00000616154 IL6P05231 212 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 NCF2P19878 526 aaPredicted RBP16.85■□□□□ 0.29
CDX1-202ENST00000616154 TMEM201Q5SNT2 666 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 ADAM5Q6NVV9 412 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 TFAP2EQ6VUC0 442 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 MSANTD1Q6ZTZ1 278 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 MIER2Q8N344 545 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 TRIML2Q8N7C3 387 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 FAM71CQ8NEG0 241 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 FBXO27Q8NI29 283 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 GPR119Q8TDV5 335 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 AKAP1Q92667 903 aaKnown RBP eCLIP16.85■□□□□ 0.29
CDX1-202ENST00000616154 S100PBPQ96BU1 408 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 REXO5Q96IC2 774 aaKnown RBP16.85■□□□□ 0.29
CDX1-202ENST00000616154 TACO1Q9BSH4 297 aaKnown RBP16.85■□□□□ 0.29
CDX1-202ENST00000616154 CARD8Q9Y2G2 431 aa16.85■□□□□ 0.29
CDX1-202ENST00000616154 CADP27708 2225 aa16.84■□□□□ 0.29
CDX1-202ENST00000616154 CENPVL1A0A0U1RR11 272 aa16.84■□□□□ 0.29
CDX1-202ENST00000616154 PRAMEF27A3QJZ7 478 aa16.84■□□□□ 0.29
CDX1-202ENST00000616154 CCDC154A6NI56 674 aa16.84■□□□□ 0.29
CDX1-202ENST00000616154 ZNF264O43296 627 aa16.84■□□□□ 0.29
CDX1-202ENST00000616154 OR12D1P0DN82 309 aa16.84■□□□□ 0.29
CDX1-202ENST00000616154 UBL4AP11441 157 aa16.84■□□□□ 0.29
CDX1-202ENST00000616154 KHKP50053 298 aa16.84■□□□□ 0.29
CDX1-202ENST00000616154 ATP5J2P56134 94 aa16.84■□□□□ 0.29
CDX1-202ENST00000616154 NME5P56597 212 aa16.84■□□□□ 0.29
CDX1-202ENST00000616154 PPP2R2BQ00005 443 aa16.84■□□□□ 0.29
CDX1-202ENST00000616154 GABPB1Q06547 395 aaPredicted RBP16.84■□□□□ 0.29
CDX1-202ENST00000616154 SKP2Q13309 424 aa16.84■□□□□ 0.29
CDX1-202ENST00000616154 PDZK1Q5T2W1 519 aa16.84■□□□□ 0.29
CDX1-202ENST00000616154 ATAD3BQ5T9A4 648 aa16.84■□□□□ 0.29
CDX1-202ENST00000616154 TYW3Q6IPR3 259 aaKnown RBP16.84■□□□□ 0.29
CDX1-202ENST00000616154 FRRS1Q6ZNA5 592 aa16.84■□□□□ 0.29
CDX1-202ENST00000616154 NUFIP2Q7Z417 695 aaKnown RBP16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms