RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NARSO43776 548 aaKnown RBP16.99■□□□□ 0.31
UPF1-210ENST00000600689 FXYD6P3P58550 94 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 ATRAIDQ6UW56 229 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 MBOAT2Q6ZWT7 520 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 DCUN1D3Q8IWE4 304 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 SHISA5Q8N114 240 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 RELL2Q8NC24 303 aaPredicted RBP16.99■□□□□ 0.31
UPF1-210ENST00000600689 ZNF784Q8NCA9 323 aaPredicted RBP16.99■□□□□ 0.31
UPF1-210ENST00000600689 HGDQ93099 445 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 NXPE3Q969Y0 559 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 OR52A5Q9H2C5 316 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 HRASLSQ9HDD0 168 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 BAIAP2Q9UQB8 552 aa16.99■□□□□ 0.31
UPF1-210ENST00000600689 FAM171A2A8MVW0 826 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 KRT33BQ14525 404 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 ACOT4Q8N9L9 421 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 LINC01555Q8NAE3 123 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 SLC35A4Q96G79 324 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 SIDT1Q9NXL6 827 aaKnown RBP16.98■□□□□ 0.31
UPF1-210ENST00000600689 KNL1Q8NG31 2342 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 HEATR5BQ9P2D3 2071 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 MEIS3P1A6NDR6 274 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 OTOL1A6NHN0 477 aaPredicted RBP16.98■□□□□ 0.31
UPF1-210ENST00000600689 RLN1P04808 185 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 EPXP11678 715 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 IL9P15248 144 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 DCTDP32321 178 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 FNTBP49356 437 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 FAM111BQ6SJ93 734 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 FCRLAQ7L513 359 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 OTUB2Q96DC9 234 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 BCL2L10Q9HD36 194 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 GNG8Q9UK08 70 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 PLXNA2O75051 1894 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 CXorf51AA0A1B0GTR3 108 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 TOR1AO14656 332 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 SPDEFO95238 335 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 ADH7P40394 386 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 CCR9P51686 369 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 CSNK1G2P78368 415 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 PRR5P85299 388 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 KLF9Q13886 244 aaPredicted RBP16.98■□□□□ 0.31
UPF1-210ENST00000600689 STK11Q15831 433 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 GXYLT1Q4G148 440 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 NKX3-1Q99801 234 aaPredicted RBP16.98■□□□□ 0.31
UPF1-210ENST00000600689 GAL3ST1Q99999 423 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 NOX3Q9HBY0 568 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 LYARQ9NX58 379 aaKnown RBP16.98■□□□□ 0.31
UPF1-210ENST00000600689 WDR45Q9Y484 360 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 FKBP7Q9Y680 259 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 SESN1Q9Y6P5 492 aa16.98■□□□□ 0.31
UPF1-210ENST00000600689 SLC22A23A1A5C7 686 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 LRIT2A6NDA9 550 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 PRRT4C9JH25 899 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 DDX6P26196 483 aaKnown RBP eCLIP16.97■□□□□ 0.31
UPF1-210ENST00000600689 FRKP42685 505 aaPredicted RBP16.97■□□□□ 0.31
UPF1-210ENST00000600689 FOXK2Q01167 660 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 ZNF85Q03923 595 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 PUS10Q3MIT2 529 aaKnown RBP16.97■□□□□ 0.31
UPF1-210ENST00000600689 SLITRK4Q8IW52 837 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 SGTBQ96EQ0 304 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 RHBGQ9H310 441 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 POT1Q9NUX5 634 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 FBXO34Q9NWN3 711 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 IMPA2O14732 288 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 CSNK2A2P19784 350 aaPredicted RBP16.97■□□□□ 0.31
UPF1-210ENST00000600689 PSMB1P20618 241 aaKnown RBP16.97■□□□□ 0.31
UPF1-210ENST00000600689 BCL6P41182 706 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 GDI2P50395 445 aaKnown RBP16.97■□□□□ 0.31
UPF1-210ENST00000600689 MMP15P51511 669 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 PITPNAQ00169 270 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 ACSM1Q08AH1 577 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 RPE65Q16518 533 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 ODF4Q2M2E3 257 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 FGD2Q7Z6J4 655 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 GID4Q8IVV7 300 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 SDR9C7Q8NEX9 313 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 OR2L2Q8NH16 312 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 OR4K13Q8NH42 304 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 MARC2Q969Z3 335 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 KCTD12Q96CX2 325 aaKnown RBP16.97■□□□□ 0.31
UPF1-210ENST00000600689 SAV1Q9H4B6 383 aaPredicted RBP16.97■□□□□ 0.31
UPF1-210ENST00000600689 ADAP2Q9NPF8 381 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 NTMQ9P121 344 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 NFKBIL1Q9UBC1 381 aaPredicted RBP16.97■□□□□ 0.31
UPF1-210ENST00000600689 KCNK6Q9Y257 313 aa16.97■□□□□ 0.31
UPF1-210ENST00000600689 FAM86C2PA6NEL3 165 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 OR52A4PA6NMU1 304 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 ANXA2P2A6NMY6 339 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 NFATC1O95644 943 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 SBK2P0C263 348 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 CISD3P0C7P0 127 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 SNRPNP63162 240 aaKnown RBP16.96■□□□□ 0.31
UPF1-210ENST00000600689 DEFA5Q01523 94 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 LINC00303Q3SY05 128 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 KISS1RQ969F8 398 aaPredicted RBP16.96■□□□□ 0.31
UPF1-210ENST00000600689 NARS2Q96I59 477 aaKnown RBP16.96■□□□□ 0.31
UPF1-210ENST00000600689 LRIG1Q96JA1 1093 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 PGLYRP3Q96LB9 341 aa16.96■□□□□ 0.31
UPF1-210ENST00000600689 DMRTA2Q96SC8 542 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms