RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ZFP64Q9NPA5 681 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 MED17Q9NVC6 651 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 B4GALT7Q9UBV7 327 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 RAB26Q9ULW5 256 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 SPIN1Q9Y657 262 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-209ENST00000597423 K7ENP7 123 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 ADAM10O14672 748 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 LYPD3O95274 346 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 IGF2P01344 180 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 THY1P04216 161 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 ACADSP16219 412 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 CBLP22681 906 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 AQP4P55087 323 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 DLX5P56178 289 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 PRKCDQ05655 676 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 TTC23Q5W5X9 447 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 ZNF770Q6IQ21 691 aaPredicted RBP13.86□□□□□ -0.19
TRIM28-209ENST00000597423 PGBD2Q6P3X8 592 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 BORAQ6PGQ7 559 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 INO80CQ6PI98 192 aaPredicted RBP13.86□□□□□ -0.19
TRIM28-209ENST00000597423 IGFL2Q6UWQ7 119 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 CD300LDQ6UXZ3 194 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 PRICKLE2Q7Z3G6 844 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 ATG4DQ86TL0 474 aaPredicted RBP13.86□□□□□ -0.19
TRIM28-209ENST00000597423 ZADH2Q8N4Q0 377 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 TMEM255BQ8WV15 326 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 SMAD5Q99717 465 aaKnown RBP13.86□□□□□ -0.19
TRIM28-209ENST00000597423 BARD1Q99728 777 aaKnown RBP13.86□□□□□ -0.19
TRIM28-209ENST00000597423 PROK2Q9HC23 129 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 MRPS18CQ9Y3D5 142 aaKnown RBP13.86□□□□□ -0.19
TRIM28-209ENST00000597423 PCDHGB7Q9Y5F8 929 aa13.86□□□□□ -0.19
TRIM28-209ENST00000597423 TMED7-TICAM2A0A0A6YYA0 188 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 H0YAE9 185 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 ETV2O00321 342 aaPredicted RBP13.85□□□□□ -0.19
TRIM28-209ENST00000597423 F10P00742 488 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 PRKCAP17252 672 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 DPP4P27487 766 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 RPS6KA3P51812 740 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 CTBP2P56545 445 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 ESRRGP62508 458 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 TLE3Q04726 772 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 TSPAN31Q12999 210 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 SLC25A53Q5H9E4 307 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 ZER1Q7Z7L7 766 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 ZNF227Q86WZ6 799 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 NRMQ8IXM6 262 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 PARP8Q8N3A8 854 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 FAM98AQ8NCA5 519 aaKnown RBP13.85□□□□□ -0.19
TRIM28-209ENST00000597423 MDS2Q8NDY4 140 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 OR9Q2Q8NGE9 314 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 GTPBP3Q969Y2 492 aaKnown RBP13.85□□□□□ -0.19
TRIM28-209ENST00000597423 BPIFA2Q96DR5 249 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 GNRHR2Q96P88 292 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 SIGLEC12Q96PQ1 595 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 ZNF426Q9BUY5 554 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 OSGIN1Q9UJX0 560 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 DKKL1Q9UK85 242 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 TMED7Q9Y3B3 224 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 PCDHGA9Q9Y5G4 932 aaKnown RBP13.85□□□□□ -0.19
TRIM28-209ENST00000597423 CFAP54Q96N23 3096 aa13.85□□□□□ -0.19
TRIM28-209ENST00000597423 PCSK5Q92824 1860 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 TRAV17A0A0B4J275 112 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 C7orf72A4D263 438 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 A8MVM7 634 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 G3V3Y1 287 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 MKRN2OSH3BPM6 223 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 NME2P1O60361 137 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 IFI30P13284 250 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 OSMP13725 252 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 POU2F1P14859 743 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 HK1P19367 917 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 NME2P22392 152 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 FPR3P25089 353 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 SRD5A2P31213 254 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 HOXD11P31277 338 aaPredicted RBP13.84□□□□□ -0.19
TRIM28-209ENST00000597423 OMPP47874 163 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 DNASE1L1P49184 302 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 TNFSF10P50591 281 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 ALDH6A1Q02252 535 aaKnown RBP13.84□□□□□ -0.19
TRIM28-209ENST00000597423 TOMM20Q15388 145 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 TOMM34Q15785 309 aaPredicted RBP13.84□□□□□ -0.19
TRIM28-209ENST00000597423 PLPPR5Q32ZL2 321 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 ZNF766Q5HY98 468 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 ARSKQ6UWY0 536 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 TMPRSS11FQ6ZWK6 438 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 GALNT5Q7Z7M9 940 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 SULF2Q8IWU5 870 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 OR2M7Q8NG81 312 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 STK35Q8TDR2 534 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 SGTBQ96EQ0 304 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 TEX12Q9BXU0 123 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 TOR3AQ9H497 397 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 TMEFF2Q9UIK5 374 aaPredicted RBP13.84□□□□□ -0.19
TRIM28-209ENST00000597423 FBXL2Q9UKC9 423 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 VDAC3Q9Y277 283 aa13.84□□□□□ -0.19
TRIM28-209ENST00000597423 TMEM8BA6NDV4 472 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 EFCAB9A8MZ26 197 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 LINC01387J3KSC0 135 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 ZNF208O43345 1280 aa13.83□□□□□ -0.2
TRIM28-209ENST00000597423 OR2T1O43869 369 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms