RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 LIN52Q52LA3 116 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 RUNDC3AQ59EK9 446 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 RNF220Q5VTB9 566 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 PRAMEF8Q5VWM4 474 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 PRAMEF7Q5VXH5 474 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 PPP4R4Q6NUP7 873 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 DHDDSQ86SQ9 333 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 COMTD1Q86VU5 262 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 PEX5LQ8IYB4 626 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 NFKBIDQ8NI38 313 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 TSPEARQ8WU66 669 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 ABHD3Q8WU67 409 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 TMEM234Q8WY98 164 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 ROBO4Q8WZ75 1007 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 RBM24Q9BX46 236 aaKnown RBP9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 MCCC2Q9HCC0 563 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 BCL2L10Q9HD36 194 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 SAR1AQ9NR31 198 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 CALML5Q9NZT1 146 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 FOXD3Q9UJU5 478 aaPredicted RBP9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 MCTS1Q9ULC4 181 aaKnown RBP9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 ZNF443Q9Y2A4 671 aaPredicted RBP9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 NDUFAF1Q9Y375 327 aa9.82□□□□□ -0.84
SHKBP1-206ENST00000595523 HIVEP1P15822 2718 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 CFAP73A6NFT4 308 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 GJE1A6NN92 205 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 ANGPT2O15123 496 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 SMNDC1O75940 238 aaKnown RBP eCLIP9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 PGM3O95394 542 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 SYNGR4O95473 234 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 PABPC4LP0CB38 370 aaKnown RBP9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 GKN3PP0CG01 181 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 CD8BP10966 210 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 PRG2P13727 222 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 ENPP1P22413 925 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 PPIBP23284 216 aaKnown RBP9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 CCKARP32238 428 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 KIR2DL3P43628 341 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 IDH2P48735 452 aaKnown RBP9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 SORDQ00796 357 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 MYBPHQ13203 477 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 SYT14P1Q58G82 188 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 PDSS1Q5T2R2 415 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 GCNT6Q5T4J0 391 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 EEF1A1P5Q5VTE0 462 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 FAM214BQ7L5A3 538 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 GRINAQ7Z429 371 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 ADGRG3Q86Y34 549 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 PTOV1Q86YD1 416 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 ZZZ3Q8IYH5 903 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 ZNF563Q8TA94 476 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 BBS10Q8TAM1 723 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 C10orf82Q8WW14 230 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 CPNE4Q96A23 557 aaPredicted RBP9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 GMPPAQ96IJ6 420 aaPredicted RBP9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 ARL5BQ96KC2 179 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 LURAP1Q96LR2 239 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 ANKRD27Q96NW4 1050 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 OR5B2Q96R09 309 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 CGREF1Q99674 301 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 PRRG4Q9BZD6 226 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 KLHL14Q9P2G3 628 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 CHRNA9Q9UGM1 479 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 ING1Q9UK53 422 aaPredicted RBP9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 ITPR3Q14573 2671 aa9.81□□□□□ -0.84
SHKBP1-206ENST00000595523 VPS13CQ709C8 3753 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 IGHV3-15A0A0B4J1V0 119 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 FAM221AA4D161 298 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 FXYD1O00168 92 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 SMAD9O15198 467 aaKnown RBP9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 FRS3O43559 492 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 AGTR1P30556 359 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 SLC7A1P30825 629 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 CPOXP36551 454 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 APOBEC1P41238 236 aaKnown RBP9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 SLC1A3P43003 542 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 CPA2P48052 419 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 DIO1P49895 249 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 MTPNP58546 118 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 RAC3P60763 192 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 CDK6Q00534 326 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 FAM27E3Q08E93 113 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 KLF10Q13118 480 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 NFYCQ13952 458 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 GNA13Q14344 377 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 CAPRIN1Q14444 709 aaKnown RBP9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 LARS2Q15031 903 aaKnown RBP9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 REEP3Q6NUK4 255 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 SERPINA11Q86U17 422 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 KIF18BQ86Y91 864 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 ZNF610Q8N9Z0 462 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 OR6K3Q8NGY3 331 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 LINC01560Q8TB33 94 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 SLC25A43Q8WUT9 341 aaPredicted RBP9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 DNAJA3Q96EY1 480 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 LRRC46Q96FV0 321 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 ZNF559Q9BR84 538 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 SPATA9Q9BWV2 254 aa9.8□□□□□ -0.84
SHKBP1-206ENST00000595523 OR11A1Q9GZK7 315 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms