RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 UGT2B17O75795 530 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 NTN1O95631 604 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 NR2F1P10589 423 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 FPR1P21462 350 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 DRD4P21917 467 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 PCYT1AP49585 367 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 RNF144AP50876 292 aaPredicted RBP11.16□□□□□ -0.62
UPF1-203ENST00000594504 KLF10Q13118 480 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 GNA13Q14344 377 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 SYPL1Q16563 259 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 CTU2Q2VPK5 515 aaKnown RBP11.16□□□□□ -0.62
UPF1-203ENST00000594504 PDZK1Q5T2W1 519 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 DLEU7Q6UYE1 221 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 LRRC74BQ6ZQY2 392 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 OLIG3Q7RTU3 272 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 CPLX4Q7Z7G2 160 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 ANKFN1Q8N957 763 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 OR10D3Q8NH80 312 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 B4GALNT2Q8NHY0 566 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 POC1BQ8TC44 478 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 SH3YL1Q96HL8 342 aaPredicted RBP11.16□□□□□ -0.62
UPF1-203ENST00000594504 ADGRG7Q96K78 797 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 ELAC2Q9BQ52 826 aaKnown RBP11.16□□□□□ -0.62
UPF1-203ENST00000594504 FAM107BQ9H098 131 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 SLC38A1Q9H2H9 487 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 TMEM185BQ9H7F4 350 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 CALML5Q9NZT1 146 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.16□□□□□ -0.62
UPF1-203ENST00000594504 KCNE5Q9UJ90 142 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 CORO2BQ9UQ03 480 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 CAPN7Q9Y6W3 813 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 VPS13CQ709C8 3753 aa11.16□□□□□ -0.62
UPF1-203ENST00000594504 ACANP16112 2415 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 A0A087WZY1 265 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 A0A0J9YW62 118 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.15□□□□□ -0.62
UPF1-203ENST00000594504 TMEM247A6NEH6 219 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 BBIP1A8MTZ0 92 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 EVPLLA8MZ36 301 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 GTPBP1O00178 669 aaKnown RBP11.15□□□□□ -0.62
UPF1-203ENST00000594504 TNFSF11O14788 317 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 EIF4E2O60573 245 aaKnown RBP11.15□□□□□ -0.62
UPF1-203ENST00000594504 PLGP00747 810 aaPredicted RBP11.15□□□□□ -0.62
UPF1-203ENST00000594504 CHRM4P08173 479 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 TFPTP0C1Z6 253 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 UBL4AP11441 157 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 BMP2P12643 396 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 IL11P20809 199 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 PSMA4P25789 261 aaKnown RBP11.15□□□□□ -0.62
UPF1-203ENST00000594504 PCSK6P29122 969 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 CRISP3P54108 245 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 SUMO3P55854 103 aaPredicted RBP11.15□□□□□ -0.62
UPF1-203ENST00000594504 ZNF117Q03924 483 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 CHRNEQ04844 493 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 NFYCQ13952 458 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 COQ5Q5HYK3 327 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 ALKBH2Q6NS38 261 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 STAC2Q6ZMT1 411 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 DHDDSQ86SQ9 333 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 RETREG3Q86VR2 466 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 PRIMA1Q86XR5 153 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 ROBO4Q8WZ75 1007 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 COX4I2Q96KJ9 171 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 CGREF1Q99674 301 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 C12orf49Q9H741 205 aa11.15□□□□□ -0.62
UPF1-203ENST00000594504 MTHFD2LQ9H903 347 aaPredicted RBP11.15□□□□□ -0.62
UPF1-203ENST00000594504 CENPVL1A0A0U1RR11 272 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 AGAP5A6NIR3 686 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 FBP2O00757 339 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 ZNF264O43296 627 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 EFNA2O43921 213 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 SNX3O60493 162 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 CSTAP01040 98 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 BCHEP06276 602 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 GPX2P18283 190 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 SHC1P29353 583 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 PTH2RP49190 550 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 P2RX1P51575 399 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 ZNF41P51814 821 aaPredicted RBP11.14□□□□□ -0.63
UPF1-203ENST00000594504 CTBP2P56545 445 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 FGFBP1Q14512 234 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 TSC22D1Q15714 1073 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 MAPK11Q15759 364 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 MAPK14Q16539 360 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 TRMT5Q32P41 509 aaKnown RBP11.14□□□□□ -0.63
UPF1-203ENST00000594504 PLPPR5Q32ZL2 321 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 RUNDC3AQ59EK9 446 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 CBLN3Q6UW01 205 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 EIF3MQ7L2H7 374 aaKnown RBP11.14□□□□□ -0.63
UPF1-203ENST00000594504 SNX32Q86XE0 403 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 WFDC8Q8IUA0 241 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 CMIPQ8IY22 773 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 TOR1AIP2Q8NFQ8 470 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 OR6K3Q8NGY3 331 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 SLC38A5Q8WUX1 472 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 OSTF1Q92882 214 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 ZBTB8AQ96BR9 441 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 PLPPR2Q96GM1 343 aa11.14□□□□□ -0.63
UPF1-203ENST00000594504 GMPPAQ96IJ6 420 aaPredicted RBP11.14□□□□□ -0.63
UPF1-203ENST00000594504 RNF145Q96MT1 663 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms