RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 FUT4P22083 530 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 PAICSP22234 425 aaKnown RBP8.52□□□□□ -1.05
SS18-220ENST00000582092 CXCR1P25024 350 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 HTR2AP28223 471 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 TSPAN7P41732 249 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 MAP2K4P45985 399 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 RNF4P78317 190 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 CDK5Q00535 292 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.52□□□□□ -1.05
SS18-220ENST00000582092 C1DQ13901 141 aaKnown RBP8.52□□□□□ -1.05
SS18-220ENST00000582092 NCF4Q15080 339 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 EBPQ15125 230 aaKnown RBP8.52□□□□□ -1.05
SS18-220ENST00000582092 OAFQ86UD1 273 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 MEX3DQ86XN8 651 aaKnown RBP8.52□□□□□ -1.05
SS18-220ENST00000582092 CCDC71Q8IV32 467 aaPredicted RBP8.52□□□□□ -1.05
SS18-220ENST00000582092 ERI1Q8IV48 349 aaKnown RBP8.52□□□□□ -1.05
SS18-220ENST00000582092 C9orf40Q8IXQ3 194 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 ALDH16A1Q8IZ83 802 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 SLC43A2Q8N370 569 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 FAM26EQ8N5C1 309 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 IL22RA1Q8N6P7 574 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 CLDN22Q8N7P3 220 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 OR9Q1Q8NGQ5 310 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 OR13F1Q8NGS4 319 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 TMEM163Q8TC26 289 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 SLC22A8Q8TCC7 542 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 RAB2BQ8WUD1 216 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 APH1BQ8WW43 257 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 MUL1Q969V5 352 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 SGTBQ96EQ0 304 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 TMEM80Q96HE8 168 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 SAMD8Q96LT4 415 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 DEFB126Q9BYW3 111 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 LAT2Q9GZY6 243 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 LHPPQ9H008 270 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 PRORYQ9H606 182 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 WDR54Q9H977 334 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 ZBTB20Q9HC78 741 aaPredicted RBP8.52□□□□□ -1.05
SS18-220ENST00000582092 EXOSC3Q9NQT5 275 aaKnown RBP8.52□□□□□ -1.05
SS18-220ENST00000582092 SDHAF3Q9NRP4 125 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 MED17Q9NVC6 651 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 GPR83Q9NYM4 423 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 DNAJC27Q9NZQ0 273 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.52□□□□□ -1.05
SS18-220ENST00000582092 CARD8Q9Y2G2 431 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 PTRH2Q9Y3E5 179 aaKnown RBP8.52□□□□□ -1.05
SS18-220ENST00000582092 PCDHGB1Q9Y5G3 927 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 PCDHGA3Q9Y5H0 932 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 SPEGQ15772 3267 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 SDK2Q58EX2 2172 aa8.52□□□□□ -1.05
SS18-220ENST00000582092 A0A1W2PNU3 283 aaPredicted RBP8.51□□□□□ -1.05
SS18-220ENST00000582092 A0A1W2PQD3 144 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 VSTM2BA6NLU5 285 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 FAM47E-STBD1D6RA91 191 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 E9PQ18 207 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 M0R129 80 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 MYL12BO14950 172 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 SCO2O43819 266 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 PRKNO60260 465 aaPredicted RBP8.51□□□□□ -1.05
SS18-220ENST00000582092 ICOSLGO75144 302 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 SEC14L2O76054 403 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 CH25HO95992 272 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 HSMCR30P0CW71 290 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 HK1P19367 917 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 CCNA2P20248 432 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 PTNP21246 168 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 SLC6A6P31641 620 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 GRK5P34947 590 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 RPL4P36578 427 aaKnown RBP8.51□□□□□ -1.05
SS18-220ENST00000582092 PEX19P40855 299 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 FOLR3P41439 243 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 ACAA2P42765 397 aaKnown RBP8.51□□□□□ -1.05
SS18-220ENST00000582092 CTBP2P56545 445 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 CRYZQ08257 329 aaKnown RBP8.51□□□□□ -1.05
SS18-220ENST00000582092 CBFBQ13951 182 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 PGGHGQ32M88 737 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 PLAG1Q6DJT9 500 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 ACSM5Q6NUN0 579 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 SMARCD3Q6STE5 483 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 RTL4Q6ZR62 310 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 TMPRSS11FQ6ZWK6 438 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 MISPQ8IVT2 679 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 SLC38A9Q8NBW4 561 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 LSM14AQ8ND56 463 aaKnown RBP8.51□□□□□ -1.05
SS18-220ENST00000582092 PFN4Q8NHR9 129 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 THAP3Q8WTV1 239 aaPredicted RBP8.51□□□□□ -1.05
SS18-220ENST00000582092 KIAA1143Q96AT1 154 aaPredicted RBP8.51□□□□□ -1.05
SS18-220ENST00000582092 NACC2Q96BF6 587 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 C12orf43Q96C57 262 aaKnown RBP8.51□□□□□ -1.05
SS18-220ENST00000582092 ISOC1Q96CN7 298 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 SH3YL1Q96HL8 342 aaPredicted RBP8.51□□□□□ -1.05
SS18-220ENST00000582092 LRR1Q96L50 414 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 LRFN5Q96NI6 719 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 PRSS27Q9BQR3 290 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 RACGAP1Q9H0H5 632 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 SLC26A1Q9H2B4 701 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 OR52D1Q9H346 318 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 DSN1Q9H410 356 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 ACOT13Q9NPJ3 140 aa8.51□□□□□ -1.05
SS18-220ENST00000582092 SLC22A11Q9NSA0 550 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms