RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CCNKO75909 580 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 PPP1R3DO95685 299 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 SCGB1D2O95969 90 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 SBK2P0C263 348 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 ZNF3P17036 446 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 HK1P19367 917 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 PTBP1P26599 531 aaKnown RBP eCLIP9.29□□□□□ -0.924e-7■■■■■ 29.2
VPS53-220ENST00000576149 APEX1P27695 318 aaKnown RBP9.29□□□□□ -0.92
VPS53-220ENST00000576149 SLC6A6P31641 620 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 NUDT1P36639 197 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 MTNR1BP49286 362 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 EVX1P49640 407 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 MAZP56270 477 aaKnown RBP9.29□□□□□ -0.92
VPS53-220ENST00000576149 SKP1P63208 163 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 FGFBP1Q14512 234 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 ZSWIM7Q19AV6 140 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.29□□□□□ -0.92
VPS53-220ENST00000576149 MZT2AQ6P582 158 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 ZNF550Q7Z398 422 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 SLC43A2Q8N370 569 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 RCBTB1Q8NDN9 531 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 OR5W2Q8NH69 310 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 SENP5Q96HI0 755 aaPredicted RBP9.29□□□□□ -0.92
VPS53-220ENST00000576149 ART5Q96L15 291 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 C11orf54Q9H0W9 315 aaPredicted RBP9.29□□□□□ -0.92
VPS53-220ENST00000576149 ADGRL4Q9HBW9 690 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 MCCC2Q9HCC0 563 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 HAO2Q9NYQ3 351 aa9.29□□□□□ -0.92
VPS53-220ENST00000576149 MRPS33Q9Y291 106 aaKnown RBP9.29□□□□□ -0.92
VPS53-220ENST00000576149 SYNDIG1LA6NDD5 238 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 PLA2G10O15496 165 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 CDC123O75794 336 aaPredicted RBP9.28□□□□□ -0.92
VPS53-220ENST00000576149 PAHP00439 452 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 HLA-DQB1P01920 261 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 MT-ND5P03915 603 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 CT45A8P0DMV1 189 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 CT45A9P0DMV2 189 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 CLUP10909 449 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 GPR3P46089 330 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 SLC16A1P53985 500 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 FOXK1P85037 733 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 DAB2P98082 770 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 MAT1AQ00266 395 aaKnown RBP9.28□□□□□ -0.92
VPS53-220ENST00000576149 CSTF1Q05048 431 aaKnown RBP9.28□□□□□ -0.92
VPS53-220ENST00000576149 FAM53BQ14153 422 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 ZNF267Q14586 743 aaPredicted RBP9.28□□□□□ -0.92
VPS53-220ENST00000576149 CT45A2Q5DJT8 189 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 ULK3Q6PHR2 472 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 NLGN4YQ8NFZ3 816 aaPredicted RBP9.28□□□□□ -0.92
VPS53-220ENST00000576149 OR6F1Q8NGZ6 308 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 SLC2A12Q8TD20 617 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 TCTN2Q96GX1 697 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 MAP3K3Q99759 626 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 NDC1Q9BTX1 674 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 Q9N2J8 555 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 PRTFDC1Q9NRG1 225 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 SERTAD3Q9UJW9 196 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 FBXL4Q9UKA2 621 aa9.28□□□□□ -0.92
VPS53-220ENST00000576149 CLDN4O14493 209 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 PLPP2O43688 288 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 PRAMEF2O60811 474 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 NSA2O95478 260 aaKnown RBP9.27□□□□□ -0.92
VPS53-220ENST00000576149 IFNGP01579 166 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 MRPL3P09001 348 aaKnown RBP9.27□□□□□ -0.92
VPS53-220ENST00000576149 RPS5P46782 204 aaKnown RBP9.27□□□□□ -0.92
VPS53-220ENST00000576149 ATP12AP54707 1039 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 BTG2P78543 158 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 CRYZQ08257 329 aaKnown RBP9.27□□□□□ -0.92
VPS53-220ENST00000576149 RIN1Q13671 783 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 ERV3-1Q14264 604 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.27□□□□□ -0.92
VPS53-220ENST00000576149 COL13A1Q5TAT6 717 aaPredicted RBP9.27□□□□□ -0.92
VPS53-220ENST00000576149 ARHGAP11AQ6P4F7 1023 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 KIRREL2Q6UWL6 708 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 GPALPP1Q8IXQ4 340 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 RDH10Q8IZV5 341 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 ARL14Q8N4G2 192 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 CYB561A3Q8NBI2 242 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 ADAMTS18Q8TE60 1221 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 ACOT12Q8WYK0 555 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 SMPDL3BQ92485 455 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 MSANTD3Q96H12 275 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 DGAT2Q96PD7 388 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 DEPDC7Q96QD5 511 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 G6PC3Q9BUM1 346 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 MMP28Q9H239 520 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 C12orf49Q9H741 205 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 SYNDIG1Q9H7V2 258 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 ZMIZ1Q9ULJ6 1067 aa9.27□□□□□ -0.92
VPS53-220ENST00000576149 MEIOCA2RUB1 952 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 E9PI62 339 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 F8A1P23610 371 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 CAPZBP47756 277 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 FASLGP48023 281 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 PSMD4P55036 377 aaKnown RBP9.27□□□□□ -0.93
VPS53-220ENST00000576149 TAS2R43P59537 309 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 ZNF85Q03923 595 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 MADCAM1Q13477 382 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 P2RY14Q15391 338 aa9.27□□□□□ -0.93
VPS53-220ENST00000576149 LCN1P1Q5VSP4 162 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms