RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 MVB12BQ9H7P6 319 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 MED20Q9H944 212 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 MEAF6Q9HAF1 191 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 RDH8Q9NYR8 311 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 SLC23A2Q9UGH3 650 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 ASIC3Q9UHC3 531 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 PCYOX1Q9UHG3 505 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 SATB2Q9UPW6 733 aa5.56□□□□□ -1.52
VPS53-212ENST00000572259 IGLV3-16A0A075B6K0 115 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 CCDC162PA2VCL2 907 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 H7C1Q1 480 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 ZNF701M0R085 212 aaPredicted RBP5.55□□□□□ -1.52
VPS53-212ENST00000572259 CLIC1O00299 241 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 VCYO14598 125 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 PRMT5O14744 637 aaPredicted RBP5.55□□□□□ -1.52
VPS53-212ENST00000572259 TOX3O15405 576 aaPredicted RBP5.55□□□□□ -1.52
VPS53-212ENST00000572259 SSX4O60224 188 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 CDH16O75309 829 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 CRTAPO75718 401 aaPredicted RBP5.55□□□□□ -1.52
VPS53-212ENST00000572259 DFFBO76075 338 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 TTC4O95801 387 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 GOT2P00505 430 aaKnown RBP5.55□□□□□ -1.52
VPS53-212ENST00000572259 MT-ND1P03886 318 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 RPN2P04844 631 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 RFPL3SP0C7P2 107 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 PNMTP11086 282 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 ZNF44P15621 663 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 DPP4P27487 766 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 CD82P27701 267 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 MAGEA6P43360 314 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 CTSCP53634 463 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 UCNP55089 124 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 CLDN6P56747 220 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 CFHR1Q03591 330 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 ACVR1Q04771 509 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 BST1Q10588 318 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 KCNJ11Q14654 390 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 TMED2Q15363 201 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 SYTL3Q4VX76 610 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 IL23RQ5VWK5 629 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 HIST2H2BCQ6DN03 193 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 HIST2H2BDQ6DRA6 164 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 PTRHD1Q6GMV3 140 aaKnown RBP5.55□□□□□ -1.52
VPS53-212ENST00000572259 C8orf74Q6P047 294 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 TTC23LQ6PF05 361 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 DCDC5Q6ZRR9 648 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 TRPM8Q7Z2W7 1104 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 PRUNE1Q86TP1 453 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 CCDC190Q86UF4 302 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 MARCH9Q86YJ5 346 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 STHQ8IWL8 128 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 SIDT2Q8NBJ9 832 aaKnown RBP5.55□□□□□ -1.52
VPS53-212ENST00000572259 OR13J1Q8NGT2 312 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 TRMT10AQ8TBZ6 339 aaKnown RBP5.55□□□□□ -1.52
VPS53-212ENST00000572259 CHPT1Q8WUD6 406 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 ASZ1Q8WWH4 475 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 ELMO1Q92556 727 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 SLCO2A1Q92959 643 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 EMG1Q92979 244 aaKnown RBP5.55□□□□□ -1.52
VPS53-212ENST00000572259 SARAFQ96BY9 339 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 ORAI1Q96D31 301 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 CAPZA3Q96KX2 299 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 FOPNLQ96NB1 174 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 ALKBH7Q9BT30 221 aaPredicted RBP5.55□□□□□ -1.52
VPS53-212ENST00000572259 NAT9Q9BTE0 207 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 TMEM43Q9BTV4 400 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 NTMT1Q9BV86 223 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 KIFC1Q9BW19 673 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 WWP1Q9H0M0 922 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 MAGT1Q9H0U3 335 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 RDH14Q9HBH5 336 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 SLC40A1Q9NP59 571 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 MMP25Q9NPA2 562 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 CHRAC1Q9NRG0 131 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 IMP3Q9NV31 184 aaKnown RBP5.55□□□□□ -1.52
VPS53-212ENST00000572259 PISDQ9UG56 409 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 GNPTGQ9UJJ9 305 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 ADAM21Q9UKJ8 722 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 PYCARDQ9ULZ3 195 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 PSMD13Q9UNM6 376 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 LOXL2Q9Y4K0 774 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 PCYT1BQ9Y5K3 369 aaPredicted RBP5.55□□□□□ -1.52
VPS53-212ENST00000572259 A3GALT2U3KPV4 340 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 USP24Q9UPU5 2620 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 FREM2Q5SZK8 3169 aa5.55□□□□□ -1.52
VPS53-212ENST00000572259 DSPP15924 2871 aaKnown RBP5.54□□□□□ -1.52
VPS53-212ENST00000572259 IGHV5-10-1A0A0J9YXX1 117 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 SRRM3A6NNA2 597 aaPredicted RBP5.54□□□□□ -1.52
VPS53-212ENST00000572259 USP27XA6NNY8 438 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 CCL22O00626 93 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 PRYO14603 147 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 LCMT2O60294 686 aaKnown RBP5.54□□□□□ -1.52
VPS53-212ENST00000572259 NME2P1O60361 137 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 FCMRO60667 390 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 OR4F21O95013 312 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 VAPBO95292 243 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 EML2O95834 649 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 TGM6O95932 706 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 NUDT3O95989 172 aa5.54□□□□□ -1.52
VPS53-212ENST00000572259 LDLRP01130 860 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms