RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CHMP24386 653 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 ADH6P28332 368 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 TACR3P29371 465 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 SLC1A3P43003 542 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 SLC6A8P48029 635 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 RASSF2P50749 326 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 CBFBQ13951 182 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 OR1Q1Q15612 314 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 IGFBP7Q16270 282 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 C3AR1Q16581 482 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 ENTPD8Q5MY95 495 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 C1QL3Q5VWW1 255 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 RTL6Q6ICC9 239 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 Q6ZPB1 254 aaPredicted RBP8.37□□□□□ -1.07
VPS35-211ENST00000569950 ZNF550Q7Z398 422 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 DHFR2Q86XF0 187 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 FAM162AQ96A26 154 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 ZBTB8AQ96BR9 441 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 WDYHV1Q96HA8 205 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 PYURFQ96I23 114 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 TPD52L3Q96J77 140 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 DHRS1Q96LJ7 313 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 TIMP4Q99727 224 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 PRDM14Q9GZV8 571 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 MMADHCQ9H3L0 296 aaPredicted RBP8.37□□□□□ -1.07
VPS35-211ENST00000569950 PTGES2Q9H7Z7 377 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 HHATLQ9HCP6 504 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 CTPS2Q9NRF8 586 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 B4GALT7Q9UBV7 327 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 TESQ9UGI8 421 aaKnown RBP8.37□□□□□ -1.07
VPS35-211ENST00000569950 DKKL1Q9UK85 242 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 BAG5Q9UL15 447 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 V9GYQ6 96 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 USP9YO00507 2555 aaPredicted RBP8.36□□□□□ -1.07
VPS35-211ENST00000569950 CACNA1CQ13936 2221 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 A0A0J9YW62 118 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 TMEM72A0PK05 275 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 AQP12BA6NM10 295 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 ANKRD65E5RJM6 399 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 ADAMDEC1O15204 470 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 CPN1P15169 458 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 ELK4P28324 431 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 UQCRFS1P47985 274 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 ERFP50548 548 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 CDH12P55289 794 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 MRPL49Q13405 166 aaKnown RBP8.36□□□□□ -1.07
VPS35-211ENST00000569950 PIN1Q13526 163 aaPredicted RBP8.36□□□□□ -1.07
VPS35-211ENST00000569950 IFI44LQ53G44 452 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 KRTCAP3Q53RY4 240 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 MTX3Q5HYI7 312 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 RAET1LQ5VY80 246 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 WBP2NLQ6ICG8 309 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 PLXDC2Q6UX71 529 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 SEM1Q6ZVN7 128 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 PIWIL3Q7Z3Z3 882 aaKnown RBP8.36□□□□□ -1.07
VPS35-211ENST00000569950 GRINAQ7Z429 371 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 AQP12AQ8IXF9 295 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 GHDCQ8N2G8 530 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 RPRMLQ8N4K4 120 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 PAPD5Q8NDF8 572 aaKnown RBP8.36□□□□□ -1.07
VPS35-211ENST00000569950 ST6GALNAC3Q8NDV1 305 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 OR14L1PQ8NHC6 308 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 ADAMTS16Q8TE57 1224 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 CANT1Q8WVQ1 401 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 RASSF5Q8WWW0 418 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 GEMIN6Q8WXD5 167 aaKnown RBP8.36□□□□□ -1.07
VPS35-211ENST00000569950 PROX1Q92786 737 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 SLC38A4Q969I6 547 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 DUS3LQ96G46 650 aaKnown RBP8.36□□□□□ -1.07
VPS35-211ENST00000569950 ARL5BQ96KC2 179 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 MCHR1Q99705 422 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 ZNF559Q9BR84 538 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 PTDSS2Q9BVG9 487 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 TRIM2Q9C040 744 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 OR11A1Q9GZK7 315 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 EVA1AQ9H8M9 152 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 PNPLA3Q9NST1 481 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 ADPRHL2Q9NX46 363 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 VNN3Q9NY84 501 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 RPS6KA6Q9UK32 745 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 PRDM4Q9UKN5 801 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 SAMD4AQ9UPU9 718 aaKnown RBP8.36□□□□□ -1.07
VPS35-211ENST00000569950 FAM215AQ9Y5M1 114 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 ENPP4Q9Y6X5 453 aa8.36□□□□□ -1.07
VPS35-211ENST00000569950 A0A087WUJ7 227 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 TMED7-TICAM2A0A0A6YYA0 188 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 OR14I1A6ND48 311 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 CPSF4LA6NMK7 179 aaKnown RBP8.35□□□□□ -1.07
VPS35-211ENST00000569950 ZNF814B7Z6K7 855 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 FTCDNL1E5RQL4 147 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 H3BNX3 289 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 hCG_2039718K7EN88 272 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 DIRAS1O95057 198 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 NUDT14O95848 222 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 ACTL6AO96019 429 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 IFNA14P01570 189 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 MT-ND1P03886 318 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 OPN1LWP04000 364 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 IMPDH2P12268 514 aa8.35□□□□□ -1.07
VPS35-211ENST00000569950 PEPDP12955 493 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms