RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CFDP00746 253 aaPredicted RBP13.42□□□□□ -0.26
VPS35-210ENST00000568784 PVRP15151 417 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 KIAA1024LP59773 190 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 GALEQ14376 348 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 CD200R1LQ6Q8B3 271 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 OR8S1Q8NH09 359 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 TNFAIP8L1Q8WVP5 186 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 PMEPA1Q969W9 287 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 MS4A4EQ96PG1 132 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 NKX3-1Q99801 234 aaPredicted RBP13.42□□□□□ -0.26
VPS35-210ENST00000568784 GDF15Q99988 308 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 CCDC3Q9BQI4 270 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 AICDAQ9GZX7 198 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 SLC6A20Q9NP91 592 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 ACSL5Q9ULC5 683 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 ADAM18Q9Y3Q7 739 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 IDSB3KWA1 339 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 PRKNO60260 465 aaPredicted RBP13.42□□□□□ -0.26
VPS35-210ENST00000568784 TCTE1Q5JU00 501 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 SPERTQ8NA61 448 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 ADAM29Q9UKF5 820 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 GMDSO60547 372 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 THY1P04216 161 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 ANXA7P20073 488 aaKnown RBP13.42□□□□□ -0.26
VPS35-210ENST00000568784 SELENOPP49908 381 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 PON3Q15166 354 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 IRF4Q15306 451 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 TMEM69Q5SWH9 247 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 SLC39A5Q6ZMH5 540 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 PTP4A1Q93096 173 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 KCNJ15Q99712 375 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.42□□□□□ -0.26
VPS35-210ENST00000568784 CLDND1Q9NY35 253 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 B3GALT2O43825 422 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 MAS1P04201 325 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 ZGLP1P0C6A0 271 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 ANKRD34CP0C6C1 535 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 FNTBP49356 437 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 AMZ1Q400G9 498 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 VASNQ6EMK4 673 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 ZNF761Q86XN6 746 aaPredicted RBP13.42□□□□□ -0.26
VPS35-210ENST00000568784 YAF2Q8IY57 180 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 OR52I2Q8NH67 350 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 MOSPD2Q8NHP6 518 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 ADAMTS14Q8WXS8 1223 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 MOAP1Q96BY2 351 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 ARL6Q9H0F7 186 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 C20orf85Q9H1P6 137 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 SLC6A17Q9H1V8 727 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 TCF7L1Q9HCS4 588 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 EMC7Q9NPA0 242 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 NOX4Q9NPH5 578 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 SPACA6W5XKT8 324 aa13.42□□□□□ -0.26
VPS35-210ENST00000568784 DNAJB6O75190 326 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 NFATC1O95644 943 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 PRKAR1BP31321 381 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 SHC2P98077 582 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 C19orf57Q0VDD7 668 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 LGALSLQ3ZCW2 172 aaPredicted RBP13.41□□□□□ -0.26
VPS35-210ENST00000568784 ALG10BQ5I7T1 473 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 SLC25A30Q5SVS4 291 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 DCST2Q5T1A1 773 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 LILRA6Q6PI73 481 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 ENPP7Q6UWV6 458 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 WDR88Q6ZMY6 472 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 SPRED2Q7Z698 418 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 BOLLQ8N9W6 283 aaKnown RBP13.41□□□□□ -0.26
VPS35-210ENST00000568784 YIPF5Q969M3 257 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 OR10H1Q9Y4A9 318 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 A0A1W2PPL8 197 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 MOSPD3O75425 235 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 UBL3O95164 117 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 ZIC2O95409 532 aaPredicted RBP13.41□□□□□ -0.26
VPS35-210ENST00000568784 CXCL10P02778 98 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 CSN2P05814 226 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 ADRB1P08588 477 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 ZNF782Q6ZMW2 699 aaPredicted RBP13.41□□□□□ -0.26
VPS35-210ENST00000568784 DNAAF1Q8NEP3 725 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 OR5T3Q8NGG3 340 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 SFXN5Q8TD22 340 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 CNOT9Q92600 299 aaKnown RBP13.41□□□□□ -0.26
VPS35-210ENST00000568784 SDF2Q99470 211 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 ARHGDIGQ99819 225 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 SERGEFQ9UGK8 458 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 SLC35A3Q9Y2D2 325 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 RPS27P42677 84 aaKnown RBP13.41□□□□□ -0.26
VPS35-210ENST00000568784 TAS2R43P59537 309 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 ASPGQ86U10 573 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 SHISA5Q8N114 240 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 MS4A15Q8N5U1 240 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 ANGPTL6Q8NI99 470 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 SRA1Q9HD15 236 aaKnown RBP13.41□□□□□ -0.26
VPS35-210ENST00000568784 ZFP64Q9NPA5 681 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 POT1Q9NUX5 634 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 MED17Q9NVC6 651 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 INSL6Q9Y581 213 aa13.41□□□□□ -0.26
VPS35-210ENST00000568784 GXYLT2A0PJZ3 443 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 TSPAN11A1L157 253 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 HLA-DQA2P01906 255 aa13.4□□□□□ -0.26
VPS35-210ENST00000568784 RAD52P43351 418 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms