RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 NANPQ8TBE9 248 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 SELENOMQ8WWX9 145 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 PINX1Q96BK5 328 aaKnown RBP1.54□□□□□ -2.16
VPS35-207ENST00000568191 OR5B2Q96R09 309 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 GPR61Q9BZJ8 451 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 CALHM2Q9HA72 323 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 AGPAT5Q9NUQ2 364 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 IL19Q9UHD0 177 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 ANAPC7Q9UJX3 599 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 MAD1L1Q9Y6D9 718 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 PDS5BQ9NTI5 1447 aa1.54□□□□□ -2.16
VPS35-207ENST00000568191 ZNF780AO75290 641 aaPredicted RBP1.53□□□□□ -2.16
VPS35-207ENST00000568191 B3GAT3O94766 335 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 UBE4BO95155 1302 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 P04436 131 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 HBQ1P09105 142 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 CLUP10909 449 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 PDHBP11177 359 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 PTGFRP43088 359 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 MTTPP55157 894 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 ACTA2P62736 377 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 ACTC1P68032 377 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 NTHL1P78549 312 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 MADCAM1Q13477 382 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 LAGE3Q14657 143 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 ARL6IP1Q15041 203 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 TRIP10Q15642 601 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 UBE2SQ16763 222 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 NDUFA9Q16795 377 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 RAB12Q6IQ22 244 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 DHX57Q6P158 1386 aaKnown RBP1.53□□□□□ -2.16
VPS35-207ENST00000568191 C6orf89Q6UWU4 347 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 RFLNAQ6ZTI6 216 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 PNKDQ8N490 385 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 BCORP1Q8N888 145 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 OR51G2Q8NGK0 314 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 OR52B4Q8NGK2 314 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 OR5L2Q8NGL0 311 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 ZNF596Q8TC21 504 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 UBE2Q2Q8WVN8 375 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 EXOSC8Q96B26 276 aaKnown RBP1.53□□□□□ -2.16
VPS35-207ENST00000568191 CEP170P1Q96L14 293 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 VSTM2LQ96N03 204 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 KLHDC3Q9BQ90 382 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 TBCDQ9BTW9 1192 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 TPK1Q9H3S4 243 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 LPAR2Q9HBW0 351 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 LHX9Q9NQ69 397 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 TREM2Q9NZC2 230 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 AP4B1Q9Y6B7 739 aa1.53□□□□□ -2.16
VPS35-207ENST00000568191 LRP4O75096 1905 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 CCDC7Q96M83 1385 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 ANKRD30BLA7E2S9 258 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 GFYI3L273 518 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 SULT2B1O00204 365 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 JAK2O60674 1132 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 TNFSF13O75888 250 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 MOSP00540 346 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 CA1P00915 261 aaPredicted RBP1.52□□□□□ -2.17
VPS35-207ENST00000568191 IGF1P05019 195 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 MRPL3P09001 348 aaKnown RBP1.52□□□□□ -2.17
VPS35-207ENST00000568191 ZNF286BP0CG31 522 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 CCDC192P0DO97 292 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 RRASP10301 218 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 CALB2P22676 271 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 UQCRC2P22695 453 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 DPP4P27487 766 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 CAMLGP49069 296 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 BIDP55957 195 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 STARD6P59095 220 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 EWSR1Q01844 656 aaKnown RBP eCLIP1.52□□□□□ -2.17
VPS35-207ENST00000568191 NRF1Q16656 503 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 DEFB116Q30KQ4 102 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 COX15Q7KZN9 410 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 MIER3Q7Z3K6 550 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 KDM8Q8N371 416 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 ZNF615Q8N8J6 731 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 OR8H1Q8NGG4 311 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 TMEM158Q8WZ71 300 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 HPDLQ96IR7 371 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 SLC30A2Q9BRI3 323 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 HDHD3Q9BSH5 251 aaPredicted RBP1.52□□□□□ -2.17
VPS35-207ENST00000568191 ATG10Q9H0Y0 220 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 ING2Q9H160 280 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 ZNF385DQ9H6B1 395 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 INPP5EQ9NRR6 644 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 B3GNT2Q9NY97 397 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 RBAKQ9NYW8 714 aaPredicted RBP1.52□□□□□ -2.17
VPS35-207ENST00000568191 WRAP73Q9P2S5 460 aaPredicted RBP1.52□□□□□ -2.17
VPS35-207ENST00000568191 ATP6V1HQ9UI12 483 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 CYTH4Q9UIA0 394 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 TP53TG5Q9Y2B4 290 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 ZNF835Q9Y2P0 537 aa1.52□□□□□ -2.17
VPS35-207ENST00000568191 PCM1Q15154 2024 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 SPAG9O60271 1321 aaKnown RBP1.51□□□□□ -2.17
VPS35-207ENST00000568191 MAP3K15Q6ZN16 1313 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 A0A1B0GWB2 263 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 FAM230AA0A1W2PPH8 454 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 PP2D1A8MPX8 630 aa1.51□□□□□ -2.17
VPS35-207ENST00000568191 FAM189A1O60320 539 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 158.2 ms