RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 KLHL4Q9C0H6 718 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 WDR55Q9H6Y2 383 aaPredicted RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 C12orf49Q9H741 205 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 COQ10BQ9H8M1 238 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 BCO1Q9HAY6 547 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 EXOSC3Q9NQT5 275 aaKnown RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 SERINC1Q9NRX5 453 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 ACER3Q9NUN7 267 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 BEX4Q9NWD9 120 aaPredicted RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 C6orf203Q9P0P8 240 aaPredicted RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 KLHL9Q9P2J3 617 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 KLHL13Q9P2N7 655 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 KCNE5Q9UJ90 142 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 CLEC4AQ9UMR7 237 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 LIPT1Q9Y234 373 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 SPIN1Q9Y657 262 aaPredicted RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 TEP1Q99973 2627 aaKnown RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 SPG11Q96JI7 2443 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 ABCA4P78363 2273 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 AKAP6Q13023 2319 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 NIPBLQ6KC79 2804 aaeCLIP4.26□□□□□ -1.73
CLK3-219ENST00000567805 A0A1W2PNR3 127 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 A0A1W2PPR1 153 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 PRAMEF27A3QJZ7 478 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 C9JVG2 144 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 RFXANKO14593 260 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 SIAH2O43255 324 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 ICMTO60725 284 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 CYTIPO60759 359 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 GCM2O75603 506 aaPredicted RBP4.26□□□□□ -1.73
CLK3-219ENST00000567805 PRKD3O94806 890 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 KRT75O95678 551 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 THBDP07204 575 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 YES1P07947 543 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 CHRM4P08173 479 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 ZCCHC18P0CG32 403 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 CD99P14209 185 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 CD53P19397 219 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 KLK2P20151 261 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 PSMB1P20618 241 aaKnown RBP4.26□□□□□ -1.73
CLK3-219ENST00000567805 FPR1P21462 350 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 RPS4Y1P22090 263 aaKnown RBP4.26□□□□□ -1.73
CLK3-219ENST00000567805 ENPP1P22413 925 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 APOBEC1P41238 236 aaKnown RBP4.26□□□□□ -1.73
CLK3-219ENST00000567805 CDKN2CP42773 168 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 HTR3AP46098 478 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 DIO1P49895 249 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 NR1H2P55055 460 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 CSNK2A1P68400 391 aaPredicted RBP4.26□□□□□ -1.73
CLK3-219ENST00000567805 ADAM8P78325 824 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 KCNJ10P78508 379 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 CHRNEQ04844 493 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 RASGEF1BQ0VAM2 473 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 MERTKQ12866 999 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 GNA13Q14344 377 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 SYPL1Q16563 259 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 SLC9B1Q4ZJI4 515 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 SYT14P1Q58G82 188 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 BEX5Q5H9J7 111 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 AGBL2Q5U5Z8 902 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 ANKRD34AQ69YU3 496 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 TFAP2EQ6VUC0 442 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 C20orf204Q6ZNR8 217 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 LRRC74BQ6ZQY2 392 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 ZNF621Q6ZSS3 439 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 MSANTD1Q6ZTZ1 278 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 PLEKHM3Q6ZWE6 761 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 OLIG3Q7RTU3 272 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 GRINAQ7Z429 371 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 MAVSQ7Z434 540 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 RNF130Q86XS8 419 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 TUSC5Q8IXB3 177 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 CMIPQ8IY22 773 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 GABRG1Q8N1C3 465 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 MIER2Q8N344 545 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 ARFGAP2Q8N6H7 521 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 ATP6V1C2Q8NEY4 427 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 STEAP2Q8NFT2 490 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 ZNF563Q8TA94 476 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 WDR60Q8WVS4 1066 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 ZNF75CPQ92670 426 aaPredicted RBP4.26□□□□□ -1.73
CLK3-219ENST00000567805 PMM1Q92871 262 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 PIGTQ969N2 578 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 ZNF524Q96C55 264 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 ZG16BQ96DA0 208 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 PIK3IP1Q96FE7 263 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 ZC3HAV1LQ96H79 300 aaKnown RBP4.26□□□□□ -1.73
CLK3-219ENST00000567805 OR5B2Q96R09 309 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 PIP5K1AQ99755 562 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 PSD2Q9BQI7 771 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 INPP5KQ9BT40 448 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 CCDC106Q9BWC9 280 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 HDHD5Q9BXW7 423 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 ACTR6Q9GZN1 396 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 QRSL1Q9H0R6 528 aaKnown RBP4.26□□□□□ -1.73
CLK3-219ENST00000567805 SLC38A1Q9H2H9 487 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 RMND5AQ9H871 391 aa4.26□□□□□ -1.73
CLK3-219ENST00000567805 MTHFD2LQ9H903 347 aaPredicted RBP4.26□□□□□ -1.73
CLK3-219ENST00000567805 SDR39U1Q9NRG7 319 aaPredicted RBP4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms