RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 HOXB9P17482 250 aaPredicted RBP12□□□□□ -0.49
CLK3-216ENST00000564468 IL11P20809 199 aa12□□□□□ -0.49
CLK3-216ENST00000564468 KIR2DL2P43627 348 aaPredicted RBP12□□□□□ -0.49
CLK3-216ENST00000564468 CLK1P49759 484 aaKnown RBP12□□□□□ -0.49
CLK3-216ENST00000564468 MAP2K6P52564 334 aa12□□□□□ -0.49
CLK3-216ENST00000564468 RAC3P60763 192 aa12□□□□□ -0.49
CLK3-216ENST00000564468 SIRPAP78324 504 aa12□□□□□ -0.49
CLK3-216ENST00000564468 RNPS1Q15287 305 aaKnown RBP12□□□□□ -0.49
CLK3-216ENST00000564468 PAGE3Q5JUK9 113 aa12□□□□□ -0.49
CLK3-216ENST00000564468 MRPL2Q5T653 305 aaKnown RBP12□□□□□ -0.49
CLK3-216ENST00000564468 PLEKHM3Q6ZWE6 761 aa12□□□□□ -0.49
CLK3-216ENST00000564468 SLC43A2Q8N370 569 aa12□□□□□ -0.49
CLK3-216ENST00000564468 OR6K3Q8NGY3 331 aa12□□□□□ -0.49
CLK3-216ENST00000564468 BBS10Q8TAM1 723 aa12□□□□□ -0.49
CLK3-216ENST00000564468 CNOT9Q92600 299 aaKnown RBP12□□□□□ -0.49
CLK3-216ENST00000564468 STARD4Q96DR4 205 aa12□□□□□ -0.49
CLK3-216ENST00000564468 SLC39A3Q9BRY0 314 aa12□□□□□ -0.49
CLK3-216ENST00000564468 TMEM120AQ9BXJ8 343 aa12□□□□□ -0.49
CLK3-216ENST00000564468 ZNF385DQ9H6B1 395 aa12□□□□□ -0.49
CLK3-216ENST00000564468 GP6Q9HCN6 339 aa12□□□□□ -0.49
CLK3-216ENST00000564468 BCL2L10Q9HD36 194 aa12□□□□□ -0.49
CLK3-216ENST00000564468 FGFR1OP2Q9NVK5 253 aa12□□□□□ -0.49
CLK3-216ENST00000564468 DNAJB12Q9NXW2 375 aaKnown RBP12□□□□□ -0.49
CLK3-216ENST00000564468 ELOVL5Q9NYP7 299 aa12□□□□□ -0.49
CLK3-216ENST00000564468 PROCRQ9UNN8 238 aa12□□□□□ -0.49
CLK3-216ENST00000564468 DSPPQ9NZW4 1301 aa12□□□□□ -0.49
CLK3-216ENST00000564468 ABCA4P78363 2273 aa12□□□□□ -0.49
CLK3-216ENST00000564468 AKAP9Q99996 3911 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 CDHR4A6H8M9 788 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 CFAP73A6NFT4 308 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 CLDN24A6NM45 220 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 SS18L1O75177 396 aaPredicted RBP11.99□□□□□ -0.49
CLK3-216ENST00000564468 GOSR1O95249 250 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 GPX2P18283 190 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 IDH2P48735 452 aaKnown RBP11.99□□□□□ -0.49
CLK3-216ENST00000564468 COPZ1P61923 177 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 CSNK2A1P68400 391 aaPredicted RBP11.99□□□□□ -0.49
CLK3-216ENST00000564468 GUCY1A3Q02108 690 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 MAPK11Q15759 364 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 ZNF239Q16600 458 aaKnown RBP11.99□□□□□ -0.49
CLK3-216ENST00000564468 GCNT6Q5T4J0 391 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 RNF220Q5VTB9 566 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 VWA1Q6PCB0 445 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 ZNF550Q7Z398 422 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 BTLAQ7Z6A9 289 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 HMGN2P46Q86SG4 172 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 KRT73Q86Y46 540 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 DPP10Q8N608 796 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 ZHX1-C8orf76Q96EF9 292 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 OR5B2Q96R09 309 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 TACO1Q9BSH4 297 aaKnown RBP11.99□□□□□ -0.49
CLK3-216ENST00000564468 SPATA5L1Q9BVQ7 753 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 SPATA9Q9BWV2 254 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 GALNT8Q9NY28 637 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 SLC25A37Q9NYZ2 338 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 VAPAQ9P0L0 249 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 CHRNA9Q9UGM1 479 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 NDRG3Q9UGV2 375 aa11.99□□□□□ -0.49
CLK3-216ENST00000564468 TRBV5-3A0A0A0MS03 114 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 PRKD3O94806 890 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 PGM3O95394 542 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 ARAFP10398 606 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 TFPIP10646 304 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 EPXP11678 715 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 ETS2P15036 469 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 SHC1P29353 583 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 ADSLP30566 484 aaPredicted RBP11.98□□□□□ -0.49
CLK3-216ENST00000564468 CPOXP36551 454 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 MDH1P40925 334 aaKnown RBP11.98□□□□□ -0.49
CLK3-216ENST00000564468 SLC1A3P43003 542 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 KCNJ5P48544 419 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 POLR2HP52434 150 aaKnown RBP11.98□□□□□ -0.49
CLK3-216ENST00000564468 EPS8Q12929 822 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 GUSBP1Q15486 140 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 MAPRE2Q15555 327 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 SYT14P1Q58G82 188 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 ZNF311Q5JNZ3 666 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 TMEM201Q5SNT2 666 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 REEP3Q6NUK4 255 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 TMPPEQ6ZT21 453 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 FCRLAQ7L513 359 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 DHDDSQ86SQ9 333 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 STK32CQ86UX6 486 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 VRK2Q86Y07 508 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 MSRB3Q8IXL7 192 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 RNF128Q8TEB7 428 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 SLC35B4Q969S0 331 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 CCDC106Q9BWC9 280 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 TMEM38AQ9H6F2 299 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 COQ10BQ9H8M1 238 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 CTPS2Q9NRF8 586 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 PLSCR4Q9NRQ2 329 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 CRIM1Q9NZV1 1036 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 SLAMF8Q9P0V8 285 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 KLHL9Q9P2J3 617 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 ZNF443Q9Y2A4 671 aaPredicted RBP11.98□□□□□ -0.49
CLK3-216ENST00000564468 HDGFL3Q9Y3E1 203 aa11.98□□□□□ -0.49
CLK3-216ENST00000564468 SULT2B1O00204 365 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 DNPH1O43598 174 aa11.97□□□□□ -0.49
CLK3-216ENST00000564468 BCAS1O75363 584 aaPredicted RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms