RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 ZNF385DQ9H6B1 395 aa12□□□□□ -0.49
CLK3-213ENST00000563842 GP6Q9HCN6 339 aa12□□□□□ -0.49
CLK3-213ENST00000563842 BCL2L10Q9HD36 194 aa12□□□□□ -0.49
CLK3-213ENST00000563842 FGFR1OP2Q9NVK5 253 aa12□□□□□ -0.49
CLK3-213ENST00000563842 DNAJB12Q9NXW2 375 aaKnown RBP12□□□□□ -0.49
CLK3-213ENST00000563842 ELOVL5Q9NYP7 299 aa12□□□□□ -0.49
CLK3-213ENST00000563842 PROCRQ9UNN8 238 aa12□□□□□ -0.49
CLK3-213ENST00000563842 DSPPQ9NZW4 1301 aa12□□□□□ -0.49
CLK3-213ENST00000563842 ABCA4P78363 2273 aa12□□□□□ -0.49
CLK3-213ENST00000563842 DCHS2Q6V1P9 2916 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 CDHR4A6H8M9 788 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 CFAP73A6NFT4 308 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 CLDN24A6NM45 220 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 SS18L1O75177 396 aaPredicted RBP11.99□□□□□ -0.49
CLK3-213ENST00000563842 GOSR1O95249 250 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 GPX2P18283 190 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 IDH2P48735 452 aaKnown RBP11.99□□□□□ -0.49
CLK3-213ENST00000563842 COPZ1P61923 177 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 CSNK2A1P68400 391 aaPredicted RBP11.99□□□□□ -0.49
CLK3-213ENST00000563842 GUCY1A3Q02108 690 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 MAPK11Q15759 364 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 ZNF239Q16600 458 aaKnown RBP11.99□□□□□ -0.49
CLK3-213ENST00000563842 GCNT6Q5T4J0 391 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 RNF220Q5VTB9 566 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 VWA1Q6PCB0 445 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 ZNF550Q7Z398 422 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 BTLAQ7Z6A9 289 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 HMGN2P46Q86SG4 172 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 KRT73Q86Y46 540 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 DPP10Q8N608 796 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 ZHX1-C8orf76Q96EF9 292 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 OR5B2Q96R09 309 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 TACO1Q9BSH4 297 aaKnown RBP11.99□□□□□ -0.49
CLK3-213ENST00000563842 SPATA5L1Q9BVQ7 753 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 SPATA9Q9BWV2 254 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 GALNT8Q9NY28 637 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 SLC25A37Q9NYZ2 338 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 VAPAQ9P0L0 249 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 CHRNA9Q9UGM1 479 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 NDRG3Q9UGV2 375 aa11.99□□□□□ -0.49
CLK3-213ENST00000563842 TRBV5-3A0A0A0MS03 114 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 PRKD3O94806 890 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 PGM3O95394 542 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 ARAFP10398 606 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 TFPIP10646 304 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 EPXP11678 715 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 ETS2P15036 469 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 SHC1P29353 583 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 ADSLP30566 484 aaPredicted RBP11.98□□□□□ -0.49
CLK3-213ENST00000563842 CPOXP36551 454 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 MDH1P40925 334 aaKnown RBP11.98□□□□□ -0.49
CLK3-213ENST00000563842 SLC1A3P43003 542 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 KCNJ5P48544 419 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 POLR2HP52434 150 aaKnown RBP11.98□□□□□ -0.49
CLK3-213ENST00000563842 EPS8Q12929 822 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 GUSBP1Q15486 140 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 MAPRE2Q15555 327 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 SYT14P1Q58G82 188 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 ZNF311Q5JNZ3 666 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 TMEM201Q5SNT2 666 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 REEP3Q6NUK4 255 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 TMPPEQ6ZT21 453 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 FCRLAQ7L513 359 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 DHDDSQ86SQ9 333 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 STK32CQ86UX6 486 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 VRK2Q86Y07 508 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 MSRB3Q8IXL7 192 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 RNF128Q8TEB7 428 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 SLC35B4Q969S0 331 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 LURAP1Q96LR2 239 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 CCDC106Q9BWC9 280 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 TMEM38AQ9H6F2 299 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 COQ10BQ9H8M1 238 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 CTPS2Q9NRF8 586 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 PLSCR4Q9NRQ2 329 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 CRIM1Q9NZV1 1036 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 SLAMF8Q9P0V8 285 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 KLHL9Q9P2J3 617 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 ZNF443Q9Y2A4 671 aaPredicted RBP11.98□□□□□ -0.49
CLK3-213ENST00000563842 HDGFL3Q9Y3E1 203 aa11.98□□□□□ -0.49
CLK3-213ENST00000563842 SULT2B1O00204 365 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 DNPH1O43598 174 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 BCAS1O75363 584 aaPredicted RBP11.97□□□□□ -0.49
CLK3-213ENST00000563842 CGAP01215 116 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 NUDT7P0C024 238 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 POU2F1P14859 743 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 ENPP1P22413 925 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 SLC6A2P23975 617 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 CD79BP40259 229 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 CDK6Q00534 326 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 NFYCQ13952 458 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 DAZAP2Q15038 168 aaPredicted RBP11.97□□□□□ -0.49
CLK3-213ENST00000563842 RUNDC3AQ59EK9 446 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 RPS26P11Q5JNZ5 115 aaPredicted RBP11.97□□□□□ -0.49
CLK3-213ENST00000563842 DLEU7Q6UYE1 221 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 ZNF836Q6ZNA1 936 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 BEND4Q6ZU67 534 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 TMEM200AQ86VY9 491 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 ZZZ3Q8IYH5 903 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 BHLHE22Q8NFJ8 381 aaPredicted RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms