RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 LINC00612Q8N6U2 182 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 CATSPER1Q8NEC5 780 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 OR10H4Q8NGA5 316 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 ZPLD1Q8TCW7 415 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 TBX15Q96SF7 602 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 MYCBPQ99417 103 aaPredicted RBP3.03□□□□□ -1.92
VPS29-205ENST00000548539 SLC35A5Q9BS91 424 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 RNF126Q9BV68 326 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 C19orf24Q9BVV8 132 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 GCOM2Q9BZD3 368 aaPredicted RBP3.03□□□□□ -1.92
VPS29-205ENST00000548539 POLDIP2Q9Y2S7 368 aa3.03□□□□□ -1.92
VPS29-205ENST00000548539 CFAP65Q6ZU64 1925 aaKnown RBP3.02□□□□□ -1.93
VPS29-205ENST00000548539 SYNJ2BP-COX16A0A087WUM0 186 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 A0A1B0GWB2 263 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 E7ESA3 106 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 TNFSF11O14788 317 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 OR10H3O60404 316 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 SRSF10O75494 262 aaKnown RBP3.02□□□□□ -1.93
VPS29-205ENST00000548539 ATP5LO75964 103 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 SCGNO76038 276 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 SLITRK3O94933 977 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 HSMCR30P0CW71 290 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 RBMY1CP0DJD4 496 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 CCDC130P13994 396 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 TAGLN2P37802 199 aaKnown RBP3.02□□□□□ -1.93
VPS29-205ENST00000548539 MAGEA8P43361 318 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 KIR2DS2P43631 304 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 DAP3P51398 398 aaKnown RBP3.02□□□□□ -1.93
VPS29-205ENST00000548539 P2RY4P51582 365 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 DIO3P55073 304 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 KIAA0040Q15053 153 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 BEND3Q5T5X7 828 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 OR4F3Q6IEY1 312 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 Q6ZR54 194 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 NLRP9Q7RTR0 991 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 CCDC50Q8IVM0 306 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 SKA3Q8IX90 412 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 CCDC65Q8IXS2 484 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 OR2L13Q8N349 312 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 BHLHE23Q8NDY6 225 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 OR56B4Q8NH76 319 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 TCTEX1D2Q8WW35 142 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 SLC41A3Q96GZ6 507 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 TIMD4Q96H15 378 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 ZNF414Q96IQ9 312 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 CNOT6LQ96LI5 555 aaKnown RBP3.02□□□□□ -1.93
VPS29-205ENST00000548539 RPRD1AQ96P16 312 aaPredicted RBP3.02□□□□□ -1.93
VPS29-205ENST00000548539 RBM14Q96PK6 669 aaKnown RBP3.02□□□□□ -1.93
VPS29-205ENST00000548539 SLC38A2Q96QD8 506 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 ZBTB18Q99592 522 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 MAPKAP1Q9BPZ7 522 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 NIPSNAP3BQ9BS92 247 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 TUBGCP2Q9BSJ2 902 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 ZNF385DQ9H6B1 395 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 PTGES2Q9H7Z7 377 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 VCPKMTQ9H867 229 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 TNFRSF19Q9NS68 423 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 PHF11Q9UIL8 331 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 RABL2BQ9UNT1 228 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 ERVW-1Q9UQF0 538 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 ASB3Q9Y575 518 aa3.02□□□□□ -1.93
VPS29-205ENST00000548539 CLSPNQ9HAW4 1339 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 IGLV3-10A0A075B6K4 115 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 TRDCB7Z8K6 153 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 K7N7A8 449 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 POLR2DO15514 142 aaKnown RBP3.01□□□□□ -1.93
VPS29-205ENST00000548539 CXCL13O43927 109 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 TBL1XO60907 577 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 OPN1MWP04001 364 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 P0C879 139 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 OPN1MW2P0DN77 364 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 OPN1MW3P0DN78 364 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 DBTP11182 482 aaKnown RBP3.01□□□□□ -1.93
VPS29-205ENST00000548539 POU2F1P14859 743 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 GCFC2P16383 781 aaKnown RBP3.01□□□□□ -1.93
VPS29-205ENST00000548539 ZP3P21754 424 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 ANXA13P27216 316 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 AQP1P29972 269 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 NMT1P30419 496 aaKnown RBP3.01□□□□□ -1.93
VPS29-205ENST00000548539 HTR1FP30939 366 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 NTSP30990 170 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 YWHABP31946 246 aaKnown RBP3.01□□□□□ -1.93
VPS29-205ENST00000548539 TDO2P48775 406 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 BIDP55957 195 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 IGLV3-21P80748 117 aaPredicted RBP3.01□□□□□ -1.93
VPS29-205ENST00000548539 DMRTC1Q5HYR2 192 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 UQCC3Q6UW78 93 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 DNM1P46Q6ZS02 220 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 EFL1Q7Z2Z2 1120 aaKnown RBP3.01□□□□□ -1.93
VPS29-205ENST00000548539 ZNF589Q86UQ0 364 aaPredicted RBP3.01□□□□□ -1.93
VPS29-205ENST00000548539 MFSD9Q8NBP5 474 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 NEIL2Q969S2 332 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 FGGYQ96C11 551 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 COQ2Q96H96 371 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 ZNF184Q99676 751 aaPredicted RBP3.01□□□□□ -1.93
VPS29-205ENST00000548539 GAL3ST1Q99999 423 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 KLHDC3Q9BQ90 382 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 ZNF670Q9BS34 389 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 CNPY3Q9BT09 278 aa3.01□□□□□ -1.93
VPS29-205ENST00000548539 NMUR2Q9GZQ4 415 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms