RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 TMCC2O75069 709 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 ERLIN1O75477 346 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 SOX30O94993 753 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 H6PDO95479 791 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 CD3EP07766 207 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 KRT16P08779 473 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 DANCRP0C864 163 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 G6PDP11413 515 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 PRPS1L1P21108 318 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 MATN1P21941 496 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 IL32P24001 234 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 GTF2A1P52655 376 aaPredicted RBP7.5□□□□□ -1.21
USP28-215ENST00000545608 CLDN8P56748 225 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 RAC3P60763 192 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 RPS4XP62701 263 aaKnown RBP7.5□□□□□ -1.21
USP28-215ENST00000545608 PPP2R2BQ00005 443 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 KRTAP1-1Q07627 177 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 SELENBP1Q13228 472 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 ITGADQ13349 1161 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 GPR68Q15743 365 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 PDZK1Q5T2W1 519 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 OR4F3Q6IEY1 312 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 SEZ6L2Q6UXD5 910 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.5□□□□□ -1.21
USP28-215ENST00000545608 C6orf120Q7Z4R8 191 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 CLECL1Q8IZS7 167 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 SLC43A2Q8N370 569 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 RIBC1Q8N443 379 aaPredicted RBP7.5□□□□□ -1.21
USP28-215ENST00000545608 NATD1Q8N6N6 113 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 TMCO5AQ8N6Q1 288 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 MAPK1IP1LQ8NDC0 245 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 PIWIL2Q8TC59 973 aaKnown RBP7.5□□□□□ -1.21
USP28-215ENST00000545608 HSD17B8Q92506 261 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 ZNF75CPQ92670 426 aaPredicted RBP7.5□□□□□ -1.21
USP28-215ENST00000545608 KISS1RQ969F8 398 aaPredicted RBP7.5□□□□□ -1.21
USP28-215ENST00000545608 MOAP1Q96BY2 351 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 TUBGCP3Q96CW5 907 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 ZNF300Q96RE9 604 aaPredicted RBP7.5□□□□□ -1.21
USP28-215ENST00000545608 PRPF18Q99633 342 aaKnown RBP7.5□□□□□ -1.21
USP28-215ENST00000545608 PSD2Q9BQI7 771 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 THUMPD3Q9BV44 507 aaKnown RBP7.5□□□□□ -1.21
USP28-215ENST00000545608 DUSP26Q9BV47 211 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 LAT2Q9GZY6 243 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 BCO1Q9HAY6 547 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 LGALS13Q9UHV8 139 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 ADAM21Q9UKJ8 722 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 RNF115Q9Y4L5 304 aa7.5□□□□□ -1.21
USP28-215ENST00000545608 TLN2Q9Y4G6 2542 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 VGLL3A8MV65 326 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 SMAD9O15198 467 aaKnown RBP7.49□□□□□ -1.21
USP28-215ENST00000545608 ITM2AO43736 263 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 CYTIPO60759 359 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 DNAJA2O60884 412 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 NDUFS7O75251 213 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 UGT2B17O75795 530 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 CYP7B1O75881 506 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 LYZL6O75951 148 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 BPGMP07738 259 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 NUDT17P0C025 328 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 UBL4AP11441 157 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 SLC7A1P30825 629 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 SOAT1P35610 550 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 SERPINB5P36952 375 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 CDKN1AP38936 164 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 OR3A2P47893 321 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 CCR4P51679 360 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 CASP9P55211 416 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 SESN3P58005 492 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 C21orf58P58505 322 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 EMX2Q04743 252 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 RASGEF1BQ0VAM2 473 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 SKP2Q13309 424 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 CBFBQ13951 182 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 P2RY6Q15077 328 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 ZNF141Q15928 474 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 ZSCAN26Q16670 478 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 CLEC12BQ2HXU8 276 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 PGS1Q32NB8 556 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 ZNF672Q499Z4 452 aaPredicted RBP7.49□□□□□ -1.21
USP28-215ENST00000545608 TIGD2Q4W5G0 525 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 BHLHA15Q7RTS1 189 aaPredicted RBP7.49□□□□□ -1.21
USP28-215ENST00000545608 LSRQ86X29 649 aaPredicted RBP7.49□□□□□ -1.21
USP28-215ENST00000545608 TOR1AIP2Q8NFQ8 470 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 KBTBD8Q8NFY9 601 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 SMAP2Q8WU79 429 aaPredicted RBP7.49□□□□□ -1.21
USP28-215ENST00000545608 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.49□□□□□ -1.21
USP28-215ENST00000545608 FBXW5Q969U6 566 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 ANAPC16Q96DE5 110 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 OR5B2Q96R09 309 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 NMUR2Q9GZQ4 415 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 ESRP2Q9H6T0 727 aaKnown RBP7.49□□□□□ -1.21
USP28-215ENST00000545608 NGBQ9NPG2 151 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 KLHL9Q9P2J3 617 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 GDF2Q9UK05 429 aaPredicted RBP7.49□□□□□ -1.21
USP28-215ENST00000545608 MKLN1Q9UL63 735 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 MAGED1Q9Y5V3 778 aaPredicted RBP7.49□□□□□ -1.21
USP28-215ENST00000545608 NSD1Q96L73 2696 aaPredicted RBP7.49□□□□□ -1.21
USP28-215ENST00000545608 FREM1Q5H8C1 2179 aa7.49□□□□□ -1.21
USP28-215ENST00000545608 NUP214P35658 2090 aaPredicted RBP7.48□□□□□ -1.21
USP28-215ENST00000545608 WDR91A4D1P6 747 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms