RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	C1orf94	Q6P1W5	598 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	LHFPL3	Q86UP9	236 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	LMX1A	Q8TE12	382 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	DNASE2B	Q8WZ79	361 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	ELP4	Q96EB1	424 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	PRRC1	Q96M27	445 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	ZNF681	Q96N22	645 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	FAIM2	Q9BWQ8	316 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	TWSG1	Q9GZX9	223 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	SAP130	Q9H0E3	1048 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	SYNDIG1	Q9H7V2	258 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	TES	Q9UGI8	421 aa	Known RBP	13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	WDFY4	Q6ZS81	3184 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	NPIPA5	A0A0B4J1W7	369 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	NPIPA7	E9PJI5	369 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	P2RX6	O15547	441 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	NPIPA8	P0DM63	369 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	GNS	P15586	552 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	UGT2B7	P16662	529 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	PTBP1	P26599	531 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	SDC2	P34741	201 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	NXPH1	P58417	271 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	PPP3R1	P63098	170 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	EFNB1	P98172	346 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	CDK5	Q00535	292 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	HHEX	Q03014	270 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	KIR2DS3	Q14952	304 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	NCF4	Q15080	339 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	ELOC	Q15369	112 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	TFAP2E	Q6VUC0	442 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	PRSS41	Q7RTY9	318 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	OR4F15	Q8NGB8	312 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	TMEM255B	Q8WV15	326 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	PCNP	Q8WW12	178 aa	Known RBP	13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	SLC22A18	Q96BI1	424 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	SLC35A4	Q96G79	324 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	MND1	Q9BWT6	205 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	GSX2	Q9BZM3	304 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	DUSP15	Q9H1R2	295 aa	Predicted RBP	13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	TXNL4B	Q9NX01	149 aa	Known RBP	13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	ENTPD4	Q9Y227	616 aa		13.88	□□□□□ -0.19
CHFR-223	ENST00000544268	DMD	P11532	3685 aa		13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	ZC3H12D	A2A288	527 aa	Known RBP	13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	TUBAL3	A6NHL2	446 aa		13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	SGK494	L7N484	410 aa		13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	ADAM11	O75078	769 aa		13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	F8A1	P23610	371 aa		13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	MAZ	P56270	477 aa	Known RBP	13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	HSF2	Q03933	536 aa		13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	SRSF5	Q13243	272 aa	Known RBP	13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	FAM26E	Q8N5C1	309 aa		13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	OR11H4	Q8NGC9	324 aa		13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	CDS1	Q92903	461 aa		13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	RNFT2	Q96EX2	444 aa		13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	RBP7	Q96R05	134 aa		13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	MED18	Q9BUE0	208 aa		13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	LYAR	Q9NX58	379 aa	Known RBP	13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	ACTR10	Q9NZ32	417 aa		13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	EMC3	Q9P0I2	261 aa		13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	TMEM5	Q9Y2B1	443 aa		13.87	□□□□□ -0.19
CHFR-223	ENST00000544268	FAM183A	A6NL82	134 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	HR	O43593	1189 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	SDC3	O75056	442 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	SIGLEC14	Q08ET2	396 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	DEFB134	Q4QY38	66 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	TRIL	Q7L0X0	811 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	PAQR7	Q86WK9	346 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	OR4Q3	Q8NH05	313 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	BBS10	Q8TAM1	723 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	POLDIP3	Q9BY77	421 aa	Known RBP	13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	SLC6A15	Q9H2J7	730 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	FBXO34	Q9NWN3	711 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	MRPS2	Q9Y399	296 aa	Known RBP	13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	HRH3	Q9Y5N1	445 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	KLF2	Q9Y5W3	355 aa	Predicted RBP	13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	BDP1	A6H8Y1	2624 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268		A0A0A6YYJ9	748 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	CDC42EP2	O14613	210 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	BCAT2	O15382	392 aa	Predicted RBP	13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	CTSV	O60911	334 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	NCR1	O76036	304 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	MPC2	O95563	127 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	HMGN1	P05114	100 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	PRG2	P13727	222 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	CSNK2A2	P19784	350 aa	Predicted RBP	13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	INPP1	P49441	399 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	MLLT11	Q13015	90 aa	Predicted RBP	13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	OCLN	Q16625	522 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	MEDAG	Q5VYS4	303 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	ZNF730	Q6ZMV8	503 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	RTL4	Q6ZR62	310 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	ZNF655	Q8N720	491 aa	Predicted RBP	13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	OR6M1	Q8NGM8	313 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	SARG	Q9BW04	601 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	BCL2L10	Q9HD36	194 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	B3GAT2	Q9NPZ5	323 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	HRASLS2	Q9NWW9	162 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	KCNMB2	Q9Y691	235 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	RNF215	Q9Y6U7	377 aa		13.86	□□□□□ -0.19
CHFR-223	ENST00000544268	SPTB	P11277	2137 aa		13.86	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms