RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 DBIP07108 87 aaKnown RBP13.19□□□□□ -0.3
USP28-204ENST00000537642 PABPC4LP0CB38 370 aaKnown RBP13.19□□□□□ -0.3
USP28-204ENST00000537642 IL7RP16871 459 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 KLK2P20151 261 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 APOBEC1P41238 236 aaKnown RBP13.19□□□□□ -0.3
USP28-204ENST00000537642 IDH2P48735 452 aaKnown RBP13.19□□□□□ -0.3
USP28-204ENST00000537642 RAC3P60763 192 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 SQLEQ14534 574 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 RNPS1Q15287 305 aaKnown RBP13.19□□□□□ -0.3
USP28-204ENST00000537642 RGNQ15493 299 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 TESK1Q15569 626 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 EXOC3L2Q2M3D2 409 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 AGKQ53H12 422 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 SYT14P1Q58G82 188 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 RPS26P11Q5JNZ5 115 aaPredicted RBP13.19□□□□□ -0.3
USP28-204ENST00000537642 PAGE3Q5JUK9 113 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 LRIF1Q5T3J3 769 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 GRINAQ7Z429 371 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 LSRQ86X29 649 aaPredicted RBP13.19□□□□□ -0.3
USP28-204ENST00000537642 VRK2Q86Y07 508 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 MSRB3Q8IXL7 192 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 PEX5LQ8IYB4 626 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 STON2Q8WXE9 905 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 TMEM19Q96HH6 336 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 C12orf49Q9H741 205 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 ZNF446Q9NWS9 450 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 KLHL28Q9NXS3 571 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 SLC25A37Q9NYZ2 338 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 CALML5Q9NZT1 146 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 SLAMF8Q9P0V8 285 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 PRR14LQ5THK1 2151 aa13.19□□□□□ -0.3
USP28-204ENST00000537642 UQCRHLA0A096LP55 91 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 EDF1O60869 148 aaKnown RBP13.18□□□□□ -0.3
USP28-204ENST00000537642 PRKD3O94806 890 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 NUDT7P0C024 238 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 CRISP3P54108 245 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 GNA13Q14344 377 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 POU4F3Q15319 338 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 FBXW10Q5XX13 1052 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 ZNF836Q6ZNA1 936 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 TMPPEQ6ZT21 453 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 C22orf34Q6ZV56 151 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 ZNF550Q7Z398 422 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 NUFIP2Q7Z417 695 aaKnown RBP13.18□□□□□ -0.3
USP28-204ENST00000537642 ADGRG3Q86Y34 549 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 TUSC5Q8IXB3 177 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 SLC43A2Q8N370 569 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 OR52P1PQ8NH57 321 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 SLC25A43Q8WUT9 341 aaPredicted RBP13.18□□□□□ -0.3
USP28-204ENST00000537642 KLHL4Q9C0H6 718 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 GP6Q9HCN6 339 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 RLIMQ9NVW2 624 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 TMEM45AQ9NWC5 275 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 THUMPD1Q9NXG2 353 aaKnown RBP13.18□□□□□ -0.3
USP28-204ENST00000537642 KLHL13Q9P2N7 655 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 CHRNA9Q9UGM1 479 aa13.18□□□□□ -0.3
USP28-204ENST00000537642 ING1Q9UK53 422 aaPredicted RBP13.18□□□□□ -0.3
USP28-204ENST00000537642 F8P00451 2351 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 A0A1W2PPR1 153 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 CDHR4A6H8M9 788 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 CFAP73A6NFT4 308 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 FAAHO00519 579 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 CASKO14936 926 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 SMAD9O15198 467 aaKnown RBP13.17□□□□□ -0.3
USP28-204ENST00000537642 SIAH2O43255 324 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 BMP2P12643 396 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 DIO1P49895 249 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 IST1P53990 364 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 IRX1P78414 480 aaPredicted RBP13.17□□□□□ -0.3
USP28-204ENST00000537642 EPS8Q12929 822 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 FADDQ13158 208 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 LIN52Q52LA3 116 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 TMEM201Q5SNT2 666 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 ANKRD34AQ69YU3 496 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 STAC2Q6ZMT1 411 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 C10orf111Q8N326 155 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 MAL2Q969L2 176 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 ARL5BQ96KC2 179 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 PSD2Q9BQI7 771 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 MED18Q9BUE0 208 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 OR11A1Q9GZK7 315 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 RAD21L1Q9H4I0 556 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 ZNF385DQ9H6B1 395 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 PLEKHF2Q9H8W4 249 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 NPHS2Q9NP85 383 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 A4GALTQ9NPC4 353 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 VAPAQ9P0L0 249 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 C6orf203Q9P0P8 240 aaPredicted RBP13.17□□□□□ -0.3
USP28-204ENST00000537642 ST6GALNAC2Q9UJ37 374 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 DCTN4Q9UJW0 460 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 ZNF443Q9Y2A4 671 aaPredicted RBP13.17□□□□□ -0.3
USP28-204ENST00000537642 CHST2Q9Y4C5 530 aa13.17□□□□□ -0.3
USP28-204ENST00000537642 SPIN1Q9Y657 262 aaPredicted RBP13.17□□□□□ -0.3
USP28-204ENST00000537642 TRBV5-3A0A0A0MS03 114 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 TMED7-TICAM2A0A0A6YYA0 188 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 A0A0G2JPF8 293 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 TMEM247A6NEH6 219 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 DEFB108AA8MXU0 73 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 HNRNPCL2B2RXH8 293 aa13.16□□□□□ -0.3
USP28-204ENST00000537642 HNRNPCL3B7ZW38 293 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms