RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 EPM2AB3EWF7 344 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 RAMP1O60894 148 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 SURF6O75683 361 aaKnown RBP5.96□□□□□ -1.46
LSM1-202ENST00000520286 IGHV3-9P01782 118 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 RHOXF2BP0C7M4 288 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 BCKDHAP12694 445 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 NOVA1P51513 510 aaKnown RBP5.96□□□□□ -1.46
LSM1-202ENST00000520286 NDUFA8P51970 172 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 XRCC4Q13426 336 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 TMEM44Q2T9K0 475 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 CNPY1Q3B7I2 92 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 RABL6Q3YEC7 729 aaPredicted RBP5.96□□□□□ -1.46
LSM1-202ENST00000520286 KLHL22Q53GT1 634 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 FAM182AQ5T1J6 154 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 SPECC1LQ69YQ0 1117 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 KDM7AQ6ZMT4 941 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 PHC2Q8IXK0 858 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 C4orf32Q8N8J7 132 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 WDSUB1Q8N9V3 476 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 ZSCAN4Q8NAM6 433 aaPredicted RBP5.96□□□□□ -1.46
LSM1-202ENST00000520286 LINC00301Q8NCQ3 95 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 CCDC148Q8NFR7 591 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 CNIH3Q8TBE1 160 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 M1APQ8TC57 530 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 EMG1Q92979 244 aaKnown RBP5.96□□□□□ -1.46
LSM1-202ENST00000520286 SDSLQ96GA7 329 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 C18orf12Q96KH6 178 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 SECISBP2Q96T21 854 aaKnown RBP5.96□□□□□ -1.46
LSM1-202ENST00000520286 RIT2Q99578 217 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 ZBTB18Q99592 522 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 RHOXF2Q9BQY4 288 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 LRRC61Q9BV99 259 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 DCAF16Q9NXF7 216 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 MRPL11Q9Y3B7 192 aaKnown RBP5.96□□□□□ -1.46
LSM1-202ENST00000520286 GMPPBQ9Y5P6 360 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 CASP8AP2Q9UKL3 1982 aa5.96□□□□□ -1.46
LSM1-202ENST00000520286 DLEC1Q9Y238 1755 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 TDRD15B5MCY1 1934 aaKnown RBP5.95□□□□□ -1.46
LSM1-202ENST00000520286 ZSCAN5BA6NJL1 495 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 UBXN8O00124 270 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 EFNA2O43921 213 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 MGRN1O60291 552 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 TPSB2P20231 275 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 TBXA2RP21731 343 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 CMA1P23946 247 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 RPL4P36578 427 aaKnown RBP5.95□□□□□ -1.46
LSM1-202ENST00000520286 ETV5P41161 510 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 AIF1P55008 147 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 EWSR1Q01844 656 aaKnown RBP eCLIP5.95□□□□□ -1.46
LSM1-202ENST00000520286 RGS1Q08116 209 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 CD300CQ08708 224 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 TPSAB1Q15661 275 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 C17orf58Q2M2W7 97 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 VWA2Q5GFL6 755 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 ZC2HC1BQ5TFG8 222 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 ACOT1Q86TX2 421 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 LRRC49Q8IUZ0 686 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 TTC5Q8N0Z6 440 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 SLC35F6Q8N357 371 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 SYT14Q8NB59 555 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 TRIM51Q9BSJ1 452 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 APMAPQ9HDC9 416 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 MEPEQ9NQ76 525 aaPredicted RBP5.95□□□□□ -1.46
LSM1-202ENST00000520286 CRLS1Q9UJA2 301 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 PTBP2Q9UKA9 531 aaKnown RBP5.95□□□□□ -1.46
LSM1-202ENST00000520286 RNF24Q9Y225 148 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 MYH8P13535 1937 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 DICER1Q9UPY3 1922 aaKnown RBP5.95□□□□□ -1.46
LSM1-202ENST00000520286 MROH7-TTC4A0A0A0MT08 1334 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 SH3TC1Q8TE82 1336 aa5.95□□□□□ -1.46
LSM1-202ENST00000520286 AFDNP55196 1824 aaKnown RBP5.95□□□□□ -1.46
LSM1-202ENST00000520286 CCDC88AQ3V6T2 1871 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 TJP1Q07157 1748 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 KDM3BQ7LBC6 1761 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 IGHV3OR16-12A0A075B7B8 117 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 IGHV3OR16-10A0A075B7F0 116 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 A0A1B0GTH9 108 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 ERICH2A1L162 156 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 NDUFAF8A1L188 74 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 METTL21EPA6NDL7 271 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 H3BQV1 296 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 PES1O00541 588 aaKnown RBP5.94□□□□□ -1.46
LSM1-202ENST00000520286 NDUFAB1O14561 156 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 ARPC3O15145 178 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 CTDNEP1O95476 244 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 IL1BP01584 269 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 PVRP15151 417 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 ZNF44P15621 663 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 SDC1P18827 310 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 CALB2P22676 271 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 GCKP35557 465 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 MAGEA8P43361 318 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 BDKRB1P46663 353 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 BDH1Q02338 343 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 FCHO2Q0JRZ9 810 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 ZMYND11Q15326 602 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 TMEM52BQ4KMG9 183 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 BOLA3Q53S33 107 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 TTMPQ5BVD1 217 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 C10orf120Q5SQS8 335 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms