RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 OR4K17Q8NGC6 315 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 OR52I1Q8NGK6 324 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 OR2L8Q8NGY9 312 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 ALKBH4Q9NXW9 302 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 DIMT1Q9UNQ2 313 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 ZNF217O75362 1048 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 PEX14O75381 377 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 HEXBP07686 556 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 CTHP32929 405 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 RP1P56715 2156 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 FXYD6P3P58550 94 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 YBX1P67809 324 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 ACTC1P68032 377 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 ACTA1P68133 377 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 TIGD3Q6B0B8 471 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 LSMEM1Q8N8F7 131 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 OR52E2Q8NGJ4 325 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 OR9A4Q8NGU2 314 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 OR7D2Q96RA2 312 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 GABARAPL3Q9BY60 117 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 METTL8Q9H825 291 aaKnown RBP15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 SYNPO2LQ9H987 977 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 CHMP1AQ9HD42 196 aaPredicted RBP15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 WASH6PQ9NQA3 447 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 BABAM2Q9NXR7 383 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 ZNF226Q9NYT6 803 aa15.21■□□□□ 0.03
CCDC88B-209ENST00000494080 A0A0J9YY10 115 aa15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 F5H5P2 479 aa15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 H0YGG7 62 aa15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 PLPP1O14494 284 aa15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 TOR1AO14656 332 aa15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 VNN2O95498 520 aa15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 PBX2P40425 430 aa15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 ARF3P61204 181 aaPredicted RBP15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 TMEM52BQ4KMG9 183 aa15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 C3orf38Q5JPI3 329 aa15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 S100PBPQ96BU1 408 aa15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 PDXPQ96GD0 296 aa15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 NOX3Q9HBY0 568 aa15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 SDHAF3Q9NRP4 125 aa15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 TAAR2Q9P1P5 351 aa15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 GVINP1Q7Z2Y8 2422 aa15.21■□□□□ 0.02
CCDC88B-209ENST00000494080 ARID1AO14497 2285 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 DSCR3O14972 297 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 AK1P00568 194 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 IGFBP1P08833 259 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 CD6P30203 668 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 PRKXP51817 358 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 ART1P52961 327 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 DLX5P56178 289 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 CSNK1G2P78368 415 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 FAM83HQ6ZRV2 1179 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 DAZLQ92904 295 aaKnown RBP15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 POTEKPQ9BYX7 375 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 SLC6A13Q9NSD5 602 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 ACSS1Q9NUB1 689 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 POM121BA6NF01 834 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 UCHL1P09936 223 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 SHC1P29353 583 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 LTB4RQ15722 352 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 DUSP7Q16829 419 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 SHISA6Q6ZSJ9 500 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 SSX6Q7RTT6 188 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 ADGRF3Q8IZF5 1079 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 GTPBP8Q8N3Z3 284 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 NANOGP1Q8N7R0 232 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 PITX2Q99697 317 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 ZNF726A6NNF4 738 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 CDC40O60508 579 aaKnown RBP eCLIP15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 FBLP22087 321 aaKnown RBP15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 MAPK3P27361 379 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 S100A2P29034 98 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 ETV6P41212 452 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 S100A10P60903 97 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 RAP2BP61225 183 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 FGL2Q14314 439 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 TP53I3Q53FA7 332 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 C9orf50Q5SZB4 431 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 METRNLQ641Q3 311 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 LILRA6Q6PI73 481 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 MCATQ8IVS2 390 aaKnown RBP15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 OR4M1Q8NGD0 313 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 NSMAFQ92636 917 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 TM4SF18Q96CE8 201 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 ZNF582Q96NG8 517 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 PITHD1Q9GZP4 211 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 SIRT5Q9NXA8 310 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 SLC23A2Q9UGH3 650 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 SLC23A1Q9UHI7 598 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 LAMP5Q9UJQ1 280 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 ATG4BQ9Y4P1 393 aa15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 RBM7Q9Y580 266 aaKnown RBP15.2■□□□□ 0.02
CCDC88B-209ENST00000494080 GXYLT2A0PJZ3 443 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 NPIPA5E9PKD4 350 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 SNRPBP14678 240 aaKnown RBP15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 NPR2P20594 1047 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 NFYAP23511 347 aaPredicted RBP15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 SRP9P49458 86 aaKnown RBP15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 KCNJ10P78508 379 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 PIP5KL1Q5T9C9 394 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms