RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 MFN2O95140 757 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 RCBTB2O95199 551 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 TMIGD3P0DMS9 266 aaPredicted RBP13.17□□□□□ -0.3
LIMS3-205ENST00000487150 CTSSP25774 331 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 SFTPDP35247 375 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 PEX19P40855 299 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 CARD18P57730 90 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 RGS8P57771 180 aaPredicted RBP13.17□□□□□ -0.3
LIMS3-205ENST00000487150 KRT72Q14CN4 511 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 PON3Q15166 354 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 SYT14P1Q58G82 188 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 RPRMLQ8N4K4 120 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 LILRB4Q8NHJ6 448 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 GPATCH1Q9BRR8 931 aaKnown RBP13.17□□□□□ -0.3
LIMS3-205ENST00000487150 TACO1Q9BSH4 297 aaKnown RBP13.17□□□□□ -0.3
LIMS3-205ENST00000487150 TRIM8Q9BZR9 551 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 TRIM2Q9C040 744 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 TMEM185BQ9H7F4 350 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 SLC24A3Q9HC58 644 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 GP6Q9HCN6 339 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 KCNJ16Q9NPI9 418 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 BAG5Q9UL15 447 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 SLC9A8Q9Y2E8 581 aa13.17□□□□□ -0.3
LIMS3-205ENST00000487150 DNAJC13O75165 2243 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 A0A0G2JNJ9 132 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 TNFSF11O14788 317 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 FMO6PO60774 539 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 BCAS1O75363 584 aaPredicted RBP13.16□□□□□ -0.3
LIMS3-205ENST00000487150 PLGP00747 810 aaPredicted RBP13.16□□□□□ -0.3
LIMS3-205ENST00000487150 GZMMP51124 257 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 SLC7A2P52569 658 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 PLAURQ03405 335 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 RNPS1Q15287 305 aaKnown RBP13.16□□□□□ -0.3
LIMS3-205ENST00000487150 CTU2Q2VPK5 515 aaKnown RBP13.16□□□□□ -0.3
LIMS3-205ENST00000487150 SPATS1Q496A3 300 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 C5orf46Q6UWT4 87 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 C16orf89Q6UX73 402 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 MCEMP1Q8IX19 187 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 SLC43A2Q8N370 569 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 CLIP4Q8N3C7 705 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 DNAJA4Q8WW22 397 aaPredicted RBP13.16□□□□□ -0.3
LIMS3-205ENST00000487150 LZICQ8WZA0 190 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 PROX1Q92786 737 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 ADGRG7Q96K78 797 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 ZNF559Q9BR84 538 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 PIGMQ9H3S5 423 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 ALG2Q9H553 416 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 RNF122Q9H9V4 155 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 C12orf10Q9HB07 376 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 PLEKHB1Q9UF11 243 aaPredicted RBP13.16□□□□□ -0.3
LIMS3-205ENST00000487150 Q9UFV3 132 aa13.16□□□□□ -0.3
LIMS3-205ENST00000487150 FOXD3Q9UJU5 478 aaPredicted RBP13.16□□□□□ -0.3
LIMS3-205ENST00000487150 EML6Q6ZMW3 1958 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 M0QX08 132 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 AP3D1O14617 1153 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 GMNNO75496 209 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 GKN3PP0CG01 181 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 RNF224P0DH78 156 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 TFPIP10646 304 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 PNMTP11086 282 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 CXCR1P25024 350 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 TACR3P29371 465 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 ACAA2P42765 397 aaKnown RBP13.15□□□□□ -0.3
LIMS3-205ENST00000487150 SUCLG1P53597 346 aaKnown RBP13.15□□□□□ -0.3
LIMS3-205ENST00000487150 RAC3P60763 192 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 ZNF239Q16600 458 aaKnown RBP13.15□□□□□ -0.3
LIMS3-205ENST00000487150 TMEM176BQ3YBM2 270 aaPredicted RBP13.15□□□□□ -0.3
LIMS3-205ENST00000487150 SWT1Q5T5J6 900 aaKnown RBP13.15□□□□□ -0.3
LIMS3-205ENST00000487150 PPP4R4Q6NUP7 873 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 C8orf82Q6P1X6 216 aaPredicted RBP13.15□□□□□ -0.3
LIMS3-205ENST00000487150 POMZP3Q6PJE2 187 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 SEM1Q6ZVN7 128 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 SLC15A3Q8IY34 581 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 MICU2Q8IYU8 434 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 PGAM4Q8N0Y7 254 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 CADM2Q8N3J6 435 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 LSMEM1Q8N8F7 131 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 C9orf106Q8NAJ2 232 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 FNDC9Q8TBE3 224 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 BCAS4Q8TDM0 211 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 OSTF1Q92882 214 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 ZNF583Q96ND8 569 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 OR5B2Q96R09 309 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 KCTD14Q9BQ13 255 aaPredicted RBP13.15□□□□□ -0.3
LIMS3-205ENST00000487150 KLHDC3Q9BQ90 382 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 TMEM27Q9HBJ8 222 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 CTPS2Q9NRF8 586 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 ABCD2Q9UBJ2 740 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 EMC9Q9Y3B6 208 aa13.15□□□□□ -0.3
LIMS3-205ENST00000487150 USP9XQ93008 2570 aaPredicted RBP13.14□□□□□ -0.31
LIMS3-205ENST00000487150 TMED7-TICAM2A0A0A6YYA0 188 aa13.14□□□□□ -0.31
LIMS3-205ENST00000487150 A0A0J9YW62 118 aa13.14□□□□□ -0.31
LIMS3-205ENST00000487150 A1L4Q6 167 aa13.14□□□□□ -0.31
LIMS3-205ENST00000487150 FAM90A27PA6NNH2 459 aa13.14□□□□□ -0.31
LIMS3-205ENST00000487150 PRSS44E7EML9 344 aa13.14□□□□□ -0.31
LIMS3-205ENST00000487150 GSTA4O15217 222 aa13.14□□□□□ -0.31
LIMS3-205ENST00000487150 CXCL13O43927 109 aa13.14□□□□□ -0.31
LIMS3-205ENST00000487150 EIF1BO60739 113 aaKnown RBP13.14□□□□□ -0.31
LIMS3-205ENST00000487150 PMS2P2O95744 297 aa13.14□□□□□ -0.31
LIMS3-205ENST00000487150 HTR1EP28566 365 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms