RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 TEAD3Q99594 435 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 COPS8Q99627 209 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 PSD2Q9BQI7 771 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 ULBP2Q9BZM5 246 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 ACTR5Q9H9F9 607 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 IL1RL2Q9HB29 575 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 HRASLSQ9HDD0 168 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 PRSS16Q9NQE7 514 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 CLN8Q9UBY8 286 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF282Q9UDV7 671 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 PPP1R3CQ9UQK1 317 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF175Q9Y473 711 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 GMPPBQ9Y5P6 360 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 PPIAL4CA0A0B4J2A2 164 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 A0A1B0GTI1 187 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 SLC5A10A0PJK1 596 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 SAGE2PA6NJ88 616 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF233A6NK53 670 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF487B1APH4 448 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 M0QXV9 152 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 GOSR2O14653 212 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 ZBTB5O15062 677 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 CLOCKO15516 846 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 PCDH7O60245 1069 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 TPST2O60704 377 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 HUS1O60921 280 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 CTNSO60931 367 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 N4BP1O75113 896 aaKnown RBP4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 GLUD1P00367 558 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 GSRP00390 522 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 FGGP02679 453 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 MELTFP08582 738 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 PPIAL4GP0DN37 164 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 HSPD1P10809 573 aaKnown RBP4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 GP9P14770 177 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF23P17027 643 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 PSMC3P17980 439 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 GLRA1P23415 457 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 CRABP1P29762 137 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 MAP3K8P41279 467 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 MAGEA6P43360 314 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 GLUD2P49448 558 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 KPNA2P52292 529 aaKnown RBP4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 NKX2-5P52952 324 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 LIMK2P53671 638 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 ADPRHP54922 357 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 ZP1P60852 638 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 FKBP1BP68106 108 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 SULT2A1Q06520 285 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 PDIA2Q13087 525 aaKnown RBP4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 EXOSC2Q13868 293 aaKnown RBP4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 FLOT2Q14254 428 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 HNF4GQ14541 408 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 SLC36A2Q495M3 483 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 SFT2D3Q587I9 215 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 OTUD3Q5T2D3 398 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 IRAK1BP1Q5VVH5 260 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 C9orf57Q5W0N0 161 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 PLEKHA7Q6IQ23 1121 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 SPSB3Q6PJ21 355 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 DOK6Q6PKX4 331 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 UQCC3Q6UW78 93 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 LRRN1Q6UXK5 716 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF367Q7RTV3 350 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 C16orf82Q7Z2V1 217 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 DPY19L4Q7Z388 723 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 NOXA1Q86UR1 476 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 MYPOPQ86VE0 399 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 ERICH1Q86X53 443 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 CACUL1Q86Y37 369 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 APLFQ8IW19 511 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 MUC20Q8N307 709 aaPredicted RBP4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 FGFRL1Q8N441 504 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 TMEM217Q8N7C4 229 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 LMNTD1Q8N9Z9 388 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 MFSD9Q8NBP5 474 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 SLC38A9Q8NBW4 561 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 CATSPER1Q8NEC5 780 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 OR4D5Q8NGN0 318 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 OR2AJ1Q8NGZ0 328 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 MRAPQ8TCY5 172 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 ACTRT1Q8TDG2 376 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 CXorf40AQ8TE69 158 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 PHF21AQ96BD5 680 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 LGALS12Q96DT0 336 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 PELI1Q96FA3 418 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 C12orf42Q96LP6 360 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 NSMCE3Q96MG7 304 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 WFIKKN1Q96NZ8 548 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 OR6C1Q96RD1 312 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 RSG1Q9BU20 258 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF426Q9BUY5 554 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 GPR174Q9BXC1 333 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 PIGUQ9H490 435 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 SLA2Q9H6Q3 261 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF556Q9HAH1 456 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 UGT1A10Q9HAW8 530 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 POLE4Q9NR33 117 aa4.3□□□□□ -1.72
CCDC88A-210ENST00000468534 ARL15Q9NXU5 204 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms