RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 RCBTB2O95199 551 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 TMIGD3P0DMS9 266 aaPredicted RBP13.17□□□□□ -0.3
LIMS1-206ENST00000414829 CTSSP25774 331 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 SFTPDP35247 375 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 PEX19P40855 299 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 CARD18P57730 90 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 RGS8P57771 180 aaPredicted RBP13.17□□□□□ -0.3
LIMS1-206ENST00000414829 KRT72Q14CN4 511 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 PON3Q15166 354 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 SYT14P1Q58G82 188 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 RPRMLQ8N4K4 120 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 LILRB4Q8NHJ6 448 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 GPATCH1Q9BRR8 931 aaKnown RBP13.17□□□□□ -0.3
LIMS1-206ENST00000414829 TACO1Q9BSH4 297 aaKnown RBP13.17□□□□□ -0.3
LIMS1-206ENST00000414829 TRIM8Q9BZR9 551 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 TRIM2Q9C040 744 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 TMEM185BQ9H7F4 350 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 SLC24A3Q9HC58 644 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 GP6Q9HCN6 339 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 KCNJ16Q9NPI9 418 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 BAG5Q9UL15 447 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 SLC9A8Q9Y2E8 581 aa13.17□□□□□ -0.3
LIMS1-206ENST00000414829 DNAJC13O75165 2243 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 A0A0G2JNJ9 132 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 TNFSF11O14788 317 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 FMO6PO60774 539 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 BCAS1O75363 584 aaPredicted RBP13.16□□□□□ -0.3
LIMS1-206ENST00000414829 PLGP00747 810 aaPredicted RBP13.16□□□□□ -0.3
LIMS1-206ENST00000414829 GZMMP51124 257 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 SLC7A2P52569 658 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 PLAURQ03405 335 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 RNPS1Q15287 305 aaKnown RBP13.16□□□□□ -0.3
LIMS1-206ENST00000414829 CTU2Q2VPK5 515 aaKnown RBP13.16□□□□□ -0.3
LIMS1-206ENST00000414829 SPATS1Q496A3 300 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 C5orf46Q6UWT4 87 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 C16orf89Q6UX73 402 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 MCEMP1Q8IX19 187 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 SLC43A2Q8N370 569 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 CLIP4Q8N3C7 705 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 DNAJA4Q8WW22 397 aaPredicted RBP13.16□□□□□ -0.3
LIMS1-206ENST00000414829 LZICQ8WZA0 190 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 PROX1Q92786 737 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 ADGRG7Q96K78 797 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 ZNF559Q9BR84 538 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 PIGMQ9H3S5 423 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 ALG2Q9H553 416 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 RNF122Q9H9V4 155 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 C12orf10Q9HB07 376 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 PLEKHB1Q9UF11 243 aaPredicted RBP13.16□□□□□ -0.3
LIMS1-206ENST00000414829 Q9UFV3 132 aa13.16□□□□□ -0.3
LIMS1-206ENST00000414829 FOXD3Q9UJU5 478 aaPredicted RBP13.16□□□□□ -0.3
LIMS1-206ENST00000414829 EML6Q6ZMW3 1958 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 M0QX08 132 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 AP3D1O14617 1153 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 GMNNO75496 209 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 GKN3PP0CG01 181 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 RNF224P0DH78 156 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 TFPIP10646 304 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 PNMTP11086 282 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 CXCR1P25024 350 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 TACR3P29371 465 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 ACAA2P42765 397 aaKnown RBP13.15□□□□□ -0.3
LIMS1-206ENST00000414829 SUCLG1P53597 346 aaKnown RBP13.15□□□□□ -0.3
LIMS1-206ENST00000414829 RAC3P60763 192 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 ZNF239Q16600 458 aaKnown RBP13.15□□□□□ -0.3
LIMS1-206ENST00000414829 TMEM176BQ3YBM2 270 aaPredicted RBP13.15□□□□□ -0.3
LIMS1-206ENST00000414829 SWT1Q5T5J6 900 aaKnown RBP13.15□□□□□ -0.3
LIMS1-206ENST00000414829 PPP4R4Q6NUP7 873 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 C8orf82Q6P1X6 216 aaPredicted RBP13.15□□□□□ -0.3
LIMS1-206ENST00000414829 POMZP3Q6PJE2 187 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 SEM1Q6ZVN7 128 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 SLC15A3Q8IY34 581 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 MICU2Q8IYU8 434 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 PGAM4Q8N0Y7 254 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 CADM2Q8N3J6 435 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 LSMEM1Q8N8F7 131 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 C9orf106Q8NAJ2 232 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 FNDC9Q8TBE3 224 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 BCAS4Q8TDM0 211 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 OSTF1Q92882 214 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 ZNF583Q96ND8 569 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 OR5B2Q96R09 309 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 KCTD14Q9BQ13 255 aaPredicted RBP13.15□□□□□ -0.3
LIMS1-206ENST00000414829 KLHDC3Q9BQ90 382 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 TMEM27Q9HBJ8 222 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 CTPS2Q9NRF8 586 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 ABCD2Q9UBJ2 740 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 EMC9Q9Y3B6 208 aa13.15□□□□□ -0.3
LIMS1-206ENST00000414829 USP9XQ93008 2570 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-206ENST00000414829 TMED7-TICAM2A0A0A6YYA0 188 aa13.14□□□□□ -0.31
LIMS1-206ENST00000414829 A0A0J9YW62 118 aa13.14□□□□□ -0.31
LIMS1-206ENST00000414829 A1L4Q6 167 aa13.14□□□□□ -0.31
LIMS1-206ENST00000414829 FAM90A27PA6NNH2 459 aa13.14□□□□□ -0.31
LIMS1-206ENST00000414829 PRSS44E7EML9 344 aa13.14□□□□□ -0.31
LIMS1-206ENST00000414829 GSTA4O15217 222 aa13.14□□□□□ -0.31
LIMS1-206ENST00000414829 CXCL13O43927 109 aa13.14□□□□□ -0.31
LIMS1-206ENST00000414829 EIF1BO60739 113 aaKnown RBP13.14□□□□□ -0.31
LIMS1-206ENST00000414829 PMS2P2O95744 297 aa13.14□□□□□ -0.31
LIMS1-206ENST00000414829 HTR1EP28566 365 aa13.14□□□□□ -0.31
LIMS1-206ENST00000414829 KCNJ5P48544 419 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms