RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 LCN1P1Q5VSP4 162 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 CA13Q8N1Q1 262 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 CDRT4Q8N9R6 151 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 MOAP1Q96BY2 351 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 ZNF486Q96H40 463 aaPredicted RBP12.36□□□□□ -0.43
VPS54-203ENST00000409558 SLC22A4Q9H015 551 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 KNTC1P50748 2209 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 KIAA1549LQ6ZVL6 1849 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 ACOD1A6NK06 481 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 POLR1CO15160 346 aaPredicted RBP12.36□□□□□ -0.43
VPS54-203ENST00000409558 SELENOFO60613 162 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 HMGN1P05114 100 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 GABRA5P31644 462 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 ARHGAP11BQ3KRB8 267 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 ZNF628Q5EBL2 1059 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 KIRREL2Q6UWL6 708 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 KANSL1Q7Z3B3 1105 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 TMEM246Q9BRR3 403 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 GALNT9Q9HCQ5 603 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 KRCC1Q9NPI7 259 aaPredicted RBP12.36□□□□□ -0.43
VPS54-203ENST00000409558 C19orf53Q9UNZ5 99 aaPredicted RBP12.36□□□□□ -0.43
VPS54-203ENST00000409558 OPN1LWP04000 364 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 DBIP07108 87 aaKnown RBP12.36□□□□□ -0.43
VPS54-203ENST00000409558 DRD5P21918 477 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 TNFRSF4P43489 277 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 GAS1P54826 345 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 ZNF362Q5T0B9 420 aaPredicted RBP12.36□□□□□ -0.43
VPS54-203ENST00000409558 C16orf47Q6ZP98 133 aaPredicted RBP12.36□□□□□ -0.43
VPS54-203ENST00000409558 PITHD1Q9GZP4 211 aaPredicted RBP12.36□□□□□ -0.43
VPS54-203ENST00000409558 NXF2Q9GZY0 626 aaKnown RBP12.36□□□□□ -0.43
VPS54-203ENST00000409558 BRD7Q9NPI1 651 aa12.36□□□□□ -0.43
VPS54-203ENST00000409558 AHCTF1Q8WYP5 2266 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 C2CD4DB7Z1M9 353 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 MCIDASD6RGH6 385 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 GALR3O60755 368 aaPredicted RBP12.35□□□□□ -0.43
VPS54-203ENST00000409558 SQSTM1Q13501 440 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 TATDN3Q17R31 274 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 ZNF544Q6NX49 715 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 QSOX2Q6ZRP7 698 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 MEPCEQ7L2J0 689 aaKnown RBP12.35□□□□□ -0.43
VPS54-203ENST00000409558 TMEM151BQ8IW70 566 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 OR4D9Q8NGE8 314 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 BAHD1Q8TBE0 780 aaPredicted RBP12.35□□□□□ -0.43
VPS54-203ENST00000409558 ZNRF4Q8WWF5 429 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 GHSRQ92847 366 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 FRMD6Q96NE9 622 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 DGAT2Q96PD7 388 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 COQ7Q99807 217 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 PSD2Q9BQI7 771 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 BABAM2Q9NXR7 383 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 TMA7Q9Y2S6 64 aaKnown RBP12.35□□□□□ -0.43
VPS54-203ENST00000409558 TGFBR3LH3BV60 316 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 SYT5O00445 386 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 RNF13O43567 381 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 CBX7O95931 251 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 IL1AP01583 271 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 HLA-DQA2P01906 255 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 TALDO1P37837 337 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 ARL4DP49703 201 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 EEF1A1P68104 462 aaKnown RBP12.35□□□□□ -0.43
VPS54-203ENST00000409558 PRICKLE4Q2TBC4 344 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 EIPR1Q53HC9 387 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 HES5Q5TA89 166 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 NIPAL3Q6P499 406 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 TMEM91Q6ZNR0 172 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 ZNF563Q8TA94 476 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 AP3S1Q92572 193 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 KLHDC7BQ96G42 594 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 ADOQ96SZ5 270 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 NDC1Q9BTX1 674 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 SPRTNQ9H040 489 aaPredicted RBP12.35□□□□□ -0.43
VPS54-203ENST00000409558 PRTFDC1Q9NRG1 225 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 ENAMQ9NRM1 1142 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 OBP2AQ9NY56 170 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 A0A0J9YY10 115 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 TMEM221A6NGB7 291 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 PLA2G10O15496 165 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 FBXO45P0C2W1 286 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 HTR1FP30939 366 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 PSG6Q00889 435 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 ENPP2Q13822 863 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 CBLN3Q6UW01 205 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 CEP76Q8TAP6 659 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 HSPA12BQ96MM6 686 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 MESP1Q9BRJ9 268 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 GSDMCQ9BYG8 508 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 RNF32Q9H0A6 362 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 TRPV4Q9HBA0 871 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 RPRD1BQ9NQG5 326 aaKnown RBP12.35□□□□□ -0.43
VPS54-203ENST00000409558 ASB6Q9NWX5 421 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 IKZF2Q9UKS7 526 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 SLC6A5Q9Y345 797 aa12.35□□□□□ -0.43
VPS54-203ENST00000409558 FANCMQ8IYD8 2048 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 KDM8Q8N371 416 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 CHAC2Q8WUX2 184 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 NDEL1Q9GZM8 345 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 HOXD1Q9GZZ0 328 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 SF3B6Q9Y3B4 125 aaKnown RBP12.34□□□□□ -0.43
VPS54-203ENST00000409558 CYR61O00622 381 aa12.34□□□□□ -0.43
VPS54-203ENST00000409558 APBB3O95704 486 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms