RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 MMP11P24347 488 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 POU1F1P28069 291 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 HTR2AP28223 471 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 STAT5AP42229 794 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 RGS6P49758 472 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 NUDT6P53370 316 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 TSPAN31Q12999 210 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 ANKDD1AQ495B1 522 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 ARMCX4Q5H9R4 360 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 GDPGP1Q6ZNW5 385 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 PRR22Q8IZ63 422 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 FAM26EQ8N5C1 309 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 FAM71CQ8NEG0 241 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 M1APQ8TC57 530 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 PRR14Q9BWN1 585 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 NRSN2Q9GZP1 204 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 AKIRIN1Q9H9L7 192 aaPredicted RBP16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 NPFFR2Q9Y5X5 522 aa16.69■□□□□ 0.26
CCDC88C-203ENST00000389856 A0A0B4J2E0 115 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 A0A1B0GX12 115 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 A0A1W2PQ72 361 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 CDC14CA4D256 554 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 SNTNA6NMZ2 147 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 C21orf140B9A014 251 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 ALG1L2C9J202 215 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 ICOSLGO75144 302 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 UMODP07911 640 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 ICAM2P13598 275 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 TCN2P20062 427 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 FPR3P25089 353 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 ACAA2P42765 397 aaKnown RBP16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 PCOLCEQ15113 449 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 BTBD16Q32M84 506 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 NDUFAF7Q7L592 441 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 ZER1Q7Z7L7 766 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 DEFB124Q8NES8 71 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 TMEM239Q8WW34 195 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 C8orf44Q96CB5 159 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 TMEM80Q96HE8 168 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 LMF1Q96S06 567 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 GPR87Q9BY21 358 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 NXF2Q9GZY0 626 aaKnown RBP16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 LAT2Q9GZY6 243 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 SIAEQ9HAT2 523 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 AMBNQ9NP70 447 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 MED31Q9Y3C7 131 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 CORINQ9Y5Q5 1042 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 KIF26BQ2KJY2 2108 aa16.68■□□□□ 0.26
CCDC88C-203ENST00000389856 IGHV1-45A0A0A0MS14 117 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 A0A1B0GWA3 101 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 TAF4O00268 1085 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 NDUFB5O43674 189 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 PTHP01270 115 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 GADD45AP24522 165 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 CD40LGP29965 261 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 FOXL2P58012 376 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 LSM3P62310 102 aaKnown RBP16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 ZNF404Q494X3 552 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 ALG10BQ5I7T1 473 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 C3orf38Q5JPI3 329 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 FNDC7Q5VTL7 733 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 TMEM236Q5W0B7 351 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 WBP2NLQ6ICG8 309 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 NUP54Q7Z3B4 507 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 NKAIN4Q8IVV8 208 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 MFSD4AQ8N468 514 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 MCFD2Q8NI22 146 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 TEX47Q8TBZ9 253 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 TTC9Q92623 222 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 FAM86C1Q9NVL1 165 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 ZNF223Q9UK11 482 aaPredicted RBP16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 FARSAQ9Y285 508 aaKnown RBP16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 NTNG1Q9Y2I2 539 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 OTOGLQ3ZCN5 2332 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 NSG1A0A0A6YYJ2 146 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 C9orf172C9J069 976 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 J3QRK9 145 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 CCRL2O00421 344 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 ENTPD6O75354 484 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 OCM2P0CE71 109 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 OCMP0CE72 109 aaPredicted RBP16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 PNMTP11086 282 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 CSRP1P21291 193 aaKnown RBP16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 IDUAP35475 653 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 RNF144AP50876 292 aaPredicted RBP16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 SMSP52788 366 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 SSPNQ14714 243 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 TMEM44Q2T9K0 475 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 RPL13AP3Q6NVV1 102 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 RASSF6Q6ZTQ3 369 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 ZNF554Q86TJ5 538 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 NRMQ8IXM6 262 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 DND1Q8IYX4 353 aaKnown RBP16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 NLGN4XQ8N0W4 816 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 CENPSQ8N2Z9 138 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 CADM2Q8N3J6 435 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 NLGN4YQ8NFZ3 816 aaPredicted RBP16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 ELP5Q8TE02 316 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 GRHL3Q8TE85 626 aa16.67■□□□□ 0.26
CCDC88C-203ENST00000389856 CT55Q8WUE5 264 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 273.6 ms