RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 HEATR5AQ86XA9 2040 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 J3QLW9 94 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 FOXS1O43638 330 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 HLA-DQB1P01920 261 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 ZNF19P17023 458 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 F8A1P23610 371 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 E2F1Q01094 437 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 ZNF85Q03923 595 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 SLC3A1Q07837 685 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 FAM27D1Q5T7N8 215 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 PARGQ86W56 976 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 GPALPP1Q8IXQ4 340 aa20.06■□□□□ 0.8
SHMT1-202ENST00000352886 FAM25AB3EWG3 89 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 FAM25CB3EWG5 89 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 FAM25GB3EWG6 89 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 C2CD4DB7Z1M9 353 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 PLPP2O43688 288 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 HYAL3O43820 417 aaPredicted RBP20.05■□□□□ 0.8
SHMT1-202ENST00000352886 SHC1P29353 583 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 FGFBP1Q14512 234 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 ARHGAP11AQ6P4F7 1023 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 KIRREL2Q6UWL6 708 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 ST6GAL2Q96JF0 529 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 RNF121Q9H920 327 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 ADAM30Q9UKF2 790 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 N6AMT1Q9Y5N5 214 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 CTNSO60931 367 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 IGLV3-19P01714 112 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 MYL9P24844 172 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 BLKP51451 505 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 OR12D2P58182 307 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 BTG2P78543 158 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 SF3B4Q15427 424 aaKnown RBP eCLIP20.05■□□□□ 0.8
SHMT1-202ENST00000352886 NDUFAF6Q330K2 333 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 TBRG1Q3YBR2 411 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 ULK3Q6PHR2 472 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 RPTNQ6XPR3 784 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 C17orf47Q8NEP4 570 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 KLHDC7BQ96G42 594 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 ERMAPQ96PL5 475 aaPredicted RBP20.05■□□□□ 0.8
SHMT1-202ENST00000352886 Q9N2J8 555 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 PRTFDC1Q9NRG1 225 aa20.05■□□□□ 0.8
SHMT1-202ENST00000352886 DDX28Q9NUL7 540 aaKnown RBP20.05■□□□□ 0.8
SHMT1-202ENST00000352886 MRPS33Q9Y291 106 aaKnown RBP20.05■□□□□ 0.8
SHMT1-202ENST00000352886 PRUNE2Q8WUY3 3088 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 SLC19A2O60779 497 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 IFNGP01579 166 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 PTBP1P26599 531 aaKnown RBP eCLIP20.04■□□□□ 0.8
SHMT1-202ENST00000352886 ZNF141Q15928 474 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 FAAH2Q6GMR7 532 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 LINC00114Q6XXX2 140 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 VASH1Q7L8A9 365 aaPredicted RBP20.04■□□□□ 0.8
SHMT1-202ENST00000352886 ZNF550Q7Z398 422 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 OR52E2Q8NGJ4 325 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 ACOT12Q8WYK0 555 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 FRMD6Q96NE9 622 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 DGAT2Q96PD7 388 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 MAP3K3Q99759 626 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 ERVMER34-1Q9H9K5 563 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 HAO2Q9NYQ3 351 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 RPS6KB2Q9UBS0 482 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 PCDHGB7Q9Y5F8 929 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 HMX3A6NHT5 357 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 GUSBP08236 651 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 ELK1P19419 428 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 DDOSTP39656 456 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 MAP2K3P46734 347 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 PGDP52209 483 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 IFITM2Q01629 132 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 HBMQ6B0K9 141 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 SSX6Q7RTT6 188 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 SDR9C7Q8NEX9 313 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 OR5M3Q8NGP4 307 aa20.04■□□□□ 0.8
SHMT1-202ENST00000352886 THADAQ6YHU6 1953 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 A0A0B4J293 547 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 SRPX2O60687 465 aaPredicted RBP20.03■□□□□ 0.8
SHMT1-202ENST00000352886 PRAMEF2O60811 474 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 MAOAP21397 527 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 RIN1Q13671 783 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 QPRTQ15274 297 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 ZNF595Q8IYB9 648 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 RNF31Q96EP0 1072 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 TMEM43Q9BTV4 400 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 TTTY10Q9BZA0 68 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 LRIT1Q9P2V4 623 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 ERVK-19Q9WJR5 959 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 A0A1W2PPC4 97 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 NPIPB9F8W1W9 429 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 CT45A8P0DMV1 189 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 CT45A9P0DMV2 189 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 CD53P19397 219 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 ACVR1BP36896 505 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 ATP12AP54707 1039 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 TAS2R43P59537 309 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 SKP1P63208 163 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 CT45A2Q5DJT8 189 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 CEACAM19Q7Z692 300 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 RFLNBQ8N5W9 214 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 FAM98AQ8NCA5 519 aaKnown RBP20.03■□□□□ 0.8
SHMT1-202ENST00000352886 OR4K13Q8NH42 304 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms