RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 RTL4Q6ZR62 310 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 ZBTB49Q6ZSB9 765 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 CYP4Z1Q86W10 505 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 ZNF227Q86WZ6 799 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 ALDH16A1Q8IZ83 802 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 CISD2Q8N5K1 135 aaKnown RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 TEX19Q8NA77 164 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 SLC41A3Q96GZ6 507 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 FAM46AQ96IP4 442 aaKnown RBP8.38□□□□□ -1.07
USP4-202ENST00000351842 TAS2R10Q9NYW0 307 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 TMCC3Q9ULS5 477 aa8.38□□□□□ -1.07
USP4-202ENST00000351842 IGHV3-15A0A0B4J1V0 119 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 H0YJX3 145 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 H3BN98 237 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 PYCARD-AS1I3L0S3 204 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 FADS1O60427 444 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 CH25HO95992 272 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 H1F0P07305 194 aaKnown RBP8.37□□□□□ -1.07
USP4-202ENST00000351842 CXCR1P25024 350 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 IFNA8P32881 189 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 POLR2IP36954 125 aaKnown RBP8.37□□□□□ -1.07
USP4-202ENST00000351842 KCNC4Q03721 635 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 FGFBP1Q14512 234 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 GLYR1Q49A26 553 aaPredicted RBP8.37□□□□□ -1.07
USP4-202ENST00000351842 PRR30Q53SZ7 412 aaPredicted RBP8.37□□□□□ -1.07
USP4-202ENST00000351842 SMARCD3Q6STE5 483 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 UGT2A3Q6UWM9 527 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 ZADH2Q8N4Q0 377 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 LRRC17Q8N6Y2 441 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 WDSUB1Q8N9V3 476 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 OR5M9Q8NGP3 310 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 SLC7A13Q8TCU3 470 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 ALPK1Q96QP1 1244 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 SPATA9Q9BWV2 254 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 ENPP4Q9Y6X5 453 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 SPG11Q96JI7 2443 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 ALG1L2C9J202 215 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 C11orf98E9PRG8 122 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 PLGP00747 810 aaPredicted RBP8.37□□□□□ -1.07
USP4-202ENST00000351842 GP1BBP13224 206 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 PRKAR1BP31321 381 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 SLC9A3P48764 834 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 PPIAP62937 165 aaKnown RBP8.37□□□□□ -1.07
USP4-202ENST00000351842 C17orf67Q0P5P2 114 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 SEC23BQ15437 767 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 RNF220Q5VTB9 566 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 ZFP1Q6P2D0 407 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 WDR88Q6ZMY6 472 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.37□□□□□ -1.07
USP4-202ENST00000351842 NUP54Q7Z3B4 507 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 TSEN54Q7Z6J9 526 aaKnown RBP8.37□□□□□ -1.07
USP4-202ENST00000351842 ZDHHC13Q8IUH4 622 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 EID3Q8N140 333 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 AQP11Q8NBQ7 271 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 OR8K3Q8NH51 312 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 C7orf34Q96L11 122 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 SFXN2Q96NB2 322 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 SLC29A1Q99808 456 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 PTGES2Q9H7Z7 377 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 COQ10BQ9H8M1 238 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 AASSQ9UDR5 926 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 SEC14L4Q9UDX3 406 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 TTLL8A6PVC2 850 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 G3V2T6 193 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 BLOC1S5-TXNDC5H3BN57 136 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 C8BP07358 591 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 ZNF136P52737 540 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 NFATC3Q12968 1075 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 SKP2Q13309 424 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 TMEM176BQ3YBM2 270 aaPredicted RBP8.37□□□□□ -1.07
USP4-202ENST00000351842 DCST1Q5T197 706 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 SLC25A25Q6KCM7 469 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 PODNL1Q6PEZ8 512 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 IGF2-ASQ6U949 168 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 GDF7Q7Z4P5 450 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 GPAT4Q86UL3 456 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 TOR1AIP2Q8NFQ8 470 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 CYGBQ8WWM9 190 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 RASSF5Q8WWW0 418 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 HGDQ93099 445 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 DTNBP1Q96EV8 351 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 ZNF597Q96LX8 424 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 OR5B2Q96R09 309 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 PIP5K1AQ99755 562 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 RIBC2Q9H4K1 309 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 C20orf141Q9NUB4 165 aa8.37□□□□□ -1.07
USP4-202ENST00000351842 PPIEQ9UNP9 301 aaKnown RBP8.37□□□□□ -1.07
USP4-202ENST00000351842 DSPPQ9NZW4 1301 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 TRAV27A0A087WT01 109 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 NPIPA2E9PIF3 369 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 NPIPA3F8WFD2 350 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 SOCS2O14508 198 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 SP1P08047 785 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 IFI30P13284 250 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 HK1P19367 917 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 TNFSF10P50591 281 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 ARHGDIAP52565 204 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 RNFT1Q5M7Z0 435 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 PLCZ1Q86YW0 608 aa8.36□□□□□ -1.07
USP4-202ENST00000351842 OR2M7Q8NG81 312 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms